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SCN18_25_8_15_R2_B_scaffold_1992

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1992_1
unknown

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comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1992_2
unknown

Not on your lists

comp(313..819)
DNA (507bp) protein (169aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1992_3
SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_363, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(915..2126)
DNA (1212bp) protein (404aa)
Integrase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIP6_9GAMM
Integrase {ECO:0000313|EMBL:EIL87087.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
integrase
SCN18_25_8_15_R2_B_scaffold_1992_4
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2959..3282
DNA (324bp) protein (108aa)
Cytochrome c553 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSP1_9GAMM
cytochrome C
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCN18_25_8_15_R2_B_scaffold_1992_5
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3301..3657
DNA (357bp) protein (119aa)
Cytochrome c553 n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH0_9GAMM
cytochrome c553
Cytochrome c553 {ECO:0000313|EMBL:AGG88962.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_25_8_15_R2_B_scaffold_1992_6
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3740..4348)
DNA (609bp) protein (203aa)
Fe/S biogenesis protein NfuA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T5_9GAMM
Fe/S biogenesis protein NfuA {ECO:0000256|HAMAP-Rule:MF_01637, ECO:0000256|SAAS:SAAS00035357}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thioredoxin-like protein
SCN18_25_8_15_R2_B_scaffold_1992_7
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4474..4815
DNA (342bp) protein (114aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI71_9GAMM
SCN18_25_8_15_R2_B_scaffold_1992_8
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4772..5803)
DNA (1032bp) protein (344aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY9_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCN18_25_8_15_R2_B_scaffold_1992_9
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6139..9252
DNA (3114bp) protein (1038aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Ribonuclease E n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T1_9GAMM
ribonuclease, Rne/Rng family
SCN18_25_8_15_R2_B_scaffold_1992_10
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9356..10009)
DNA (654bp) protein (218aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG5_9GAMM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIL99159.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
histidine kinase
SCN18_25_8_15_R2_B_scaffold_1992_11
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11052..11732
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRW3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02205.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1992_12
unknown

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12089..12412
DNA (324bp) protein (108aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1992_13
SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, Plasmid-like

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comp(13220..13858)
DNA (639bp) protein (213aa)
HipA domain-containing protein n=1 Tax=Pseudomonas sp. G5(2012) RepID=S2EUF4_9PSED
HipA domain-containing protein {ECO:0000313|EMBL:EPA95378.1}; TaxID=1268068 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. G5(2012).;"
HipA domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1992_14
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14305..14607)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI00036D8882
Uncharacterized protein {ECO:0000313|EMBL:KFJ11474.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1992_15
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14622..14894)
DNA (273bp) protein (91aa)
TIR domain-containing protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XYY5_9FIRM
TIR domain-containing protein {ECO:0000313|EMBL:EHQ91691.1}; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1992_16

Not on your lists

comp(15037..15255)
DNA (219bp) protein (73aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZWM4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD48958.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1992_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(15276..15479)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR88_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40612.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Displaying 17 items

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