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SCN18_25_8_15_R2_B_scaffold_543

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Displaying items 1-30 of 70 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_543_1
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81..1385)
DNA (1305bp) protein (435aa)
UDP-glucose dehydrogenase {ECO:0000313|EMBL:GAO55312.1}; EC=1.1.1.22 {ECO:0000313|EMBL:GAO55312.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UDP-glucose 6-dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB5_9SPHN
UDP-glucose 6-dehydrogenase
SCN18_25_8_15_R2_B_scaffold_543_trna_5
unknown

Not on your lists

comp(1645..1718)
DNA (74bp)
transferRNA Pro
SCN18_25_8_15_R2_B_scaffold_543_2
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1967..2611
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJM0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64890.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_25_8_15_R2_B_scaffold_543_3
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2848..3915
DNA (1068bp) protein (356aa)
Transcriptional regulator, LuxR family protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4K0_9SPHN
Transcriptional regulator, LuxR family protein
Transcriptional regulator, LuxR family protein {ECO:0000313|EMBL:AGH49409.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_25_8_15_R2_B_scaffold_543_trna_4
unknown

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comp(3941..4013)
DNA (73bp)
transferRNA Met
SCN18_25_8_15_R2_B_scaffold_543_4
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4110..5816)
DNA (1707bp) protein (569aa)
Histidine protein kinase DivJ {ECO:0000313|EMBL:AKH41938.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH41938.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Two-component signal transduction histidine kinase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PEH5_9SPHN
two-component signal transduction histidine kinase
SCN18_25_8_15_R2_B_scaffold_543_5
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5984..6448
DNA (465bp) protein (155aa)
Transcriptional regulator, AsnC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8M8_NOVAD
ArsR family transcriptional regulator {ECO:0000313|EMBL:KHL26069.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
AsnC family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_543_6
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6510..6905
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WF46_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41518.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCN18_25_8_15_R2_B_scaffold_543_7
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6947..8296)
DNA (1350bp) protein (450aa)
Biotin carboxylase {ECO:0000313|EMBL:AKH41935.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AKH41935.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.3.4.14)
Acetyl-CoA carboxylase carboxyltransferase subunit alpha n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K5_NOVAD
SCN18_25_8_15_R2_B_scaffold_543_8
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8301..8807)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E8E093
Biotin carboxyl carrier protein of acetyl-CoA carboxylase {ECO:0000313|EMBL:AKH41934.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
biotin carboxyl carrier protein
SCN18_25_8_15_R2_B_scaffold_543_9
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8891..9325)
DNA (435bp) protein (145aa)
3-dehydroquinate dehydratase {ECO:0000313|EMBL:AKH41933.1}; EC=4.2.1.10 {ECO:0000313|EMBL:AKH41933.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A456
SCN18_25_8_15_R2_B_scaffold_543_10
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9410..10759)
DNA (1350bp) protein (450aa)
Exported aminopeptidase {ECO:0000313|EMBL:CEM56869.1}; EC=3.4.11.- {ECO:0000313|EMBL:CEM56869.1};; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
aminopeptidase (EC:3.4.11.-)
aminopeptidase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028895EC
SCN18_25_8_15_R2_B_scaffold_543_11
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10836..11249)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K9_NOVAD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCN18_25_8_15_R2_B_scaffold_543_12
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11320..12201)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXH1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50089.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
permease, DMT superfamily
SCN18_25_8_15_R2_B_scaffold_543_trna_3
unknown

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comp(12245..12318)
DNA (74bp)
transferRNA Pro
SCN18_25_8_15_R2_B_scaffold_543_13
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12571..12891
DNA (321bp) protein (107aa)
Preprotein translocase, YajC subunit n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9F6_9SPHN
Preprotein translocase subunit YajC {ECO:0000313|EMBL:AKH41931.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_543_14
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12907..14511
DNA (1605bp) protein (535aa)
Protein translocase subunit SecD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHJ6_9SPHN
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
secD; preprotein translocase subunit SecD
SCN18_25_8_15_R2_B_scaffold_543_15
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14527..15498
DNA (972bp) protein (324aa)
Protein-export membrane protein SecF n=1 Tax=Novosphingobium sp. AP12 RepID=J3A8G0_9SPHN
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
protein translocase subunit secF
SCN18_25_8_15_R2_B_scaffold_543_16
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15601..16173)
DNA (573bp) protein (191aa)
Putative Xre family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHY4_9SPHN
Putative Xre family transcriptional regulator {ECO:0000313|EMBL:GAD47617.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
XRE family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_543_17
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16267..16740
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DEF3
Uncharacterized protein {ECO:0000313|EMBL:AKH41927.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_543_18
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17023..18867)
DNA (1845bp) protein (615aa)
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L6_NOVAD
ABC transporter ATP-binding protein uup {ECO:0000313|EMBL:AKH41926.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ABC transporter-like protein
SCN18_25_8_15_R2_B_scaffold_543_19
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19018..19728
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYK9_9SPHN
26 kDa periplasmic immunogenic protein {ECO:0000313|EMBL:AKH41925.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
outer membrane protein
SCN18_25_8_15_R2_B_scaffold_543_20
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19829..20149
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PEJ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41924.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_543_21
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20237..20917
DNA (681bp) protein (227aa)
Transcriptional regulator n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I241_9SPHN
Transcriptional regulatory protein QseB {ECO:0000313|EMBL:AKH41923.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
two-component system OmpR family response regulator
SCN18_25_8_15_R2_B_scaffold_543_22
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20865..22334
DNA (1470bp) protein (490aa)
Sensor protein PhoQ {ECO:0000313|EMBL:AKH41922.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH41922.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Two-component signal transduction histidine kinase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBW9_ERYLH
two-component signal transduction histidine kinase
SCN18_25_8_15_R2_B_scaffold_543_23
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22406..22729
DNA (324bp) protein (108aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KHX7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32993.1}; Flags: Fragment;; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_543_24
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22989..23297)
DNA (309bp) protein (103aa)
chorismate mutase (EC:5.4.99.5)
chorismate mutase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002EF9764
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCN18_25_8_15_R2_B_scaffold_543_25
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23353..24372
DNA (1020bp) protein (340aa)
Putative octaprenyl-diphosphate synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYK4_9SPHN
Putative octaprenyl-diphosphate synthase {ECO:0000313|EMBL:GAD47608.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
farnesyltranstransferase
SCN18_25_8_15_R2_B_scaffold_543_26
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24849..27371
DNA (2523bp) protein (841aa)
ATP-dependent RNA helicase HrpB {ECO:0000313|EMBL:AKH41917.1}; EC=3.6.4.13 {ECO:0000313|EMBL:AKH41917.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ATP-dependent helicase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD070E
ATP-dependent helicase HrpB
SCN18_25_8_15_R2_B_scaffold_543_27
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27418..27696
DNA (279bp) protein (93aa)
ETC complex I subunit region n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J935_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41916.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ETC complex subunit I
Displaying items 1-30 of 70 in total

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