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SCN18_25_8_15_R2_B_scaffold_1122

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1122_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..84)
DNA (84bp) protein (28aa)
Putative transposase for insertion sequence element n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL16_9SPHN
putative transposase for insertion sequence element
Transposase {ECO:0000313|EMBL:EQB30892.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCN18_25_8_15_R2_B_scaffold_1122_2
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(116..739)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJ53_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR52747.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1122_3
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(741..1244)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZB63_9CAUL
Tax=GWF1_Sphingomonadales_63_6_curated
SCN18_25_8_15_R2_B_scaffold_1122_4
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1573..2247
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Loktanella vestfoldensis RepID=UPI0003708CC9
Uncharacterized protein {ECO:0000313|EMBL:AKH41636.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1122_5
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2602..2946
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP53814.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCN18_25_8_15_R2_B_scaffold_1122_6
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3102..6221)
DNA (3120bp) protein (1040aa)
Type I site-specific restriction-modification system, R (restriction) subunit and related helicase (EC:3.1.21.3)
Type I site-specific restriction-modification system, R subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8C6_9SPHN
Type I site-specific restriction-modification system, R subunit {ECO:0000313|EMBL:EGD59099.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCN18_25_8_15_R2_B_scaffold_1122_7
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6231..7313)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DAG1_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KEO85715.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1122_8
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7313..8260)
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8C8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59097.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1122_9
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8257..10233)
DNA (1977bp) protein (659aa)
Restriction endonuclease S subunit n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IAX2_RHIML
Restriction endonuclease S subunit
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:EFI61445.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
SCN18_25_8_15_R2_B_scaffold_1122_10
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10230..12080)
DNA (1851bp) protein (617aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
N-6 DNA methylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8D0_9SPHN
Restriction endonuclease subunit M {ECO:0000313|EMBL:KEO85718.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
SCN18_25_8_15_R2_B_scaffold_1122_11
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12141..12362)
DNA (222bp) protein (74aa)
UPI0003CF406C related cluster n=1 Tax=unknown RepID=UPI0003CF406C
Uncharacterized protein {ECO:0000313|EMBL:ESY61282.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
SCN18_25_8_15_R2_B_scaffold_1122_trna_1
unknown

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comp(12468..12540)
DNA (73bp)
transferRNA Lys
SCN18_25_8_15_R2_B_scaffold_1122_12
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12638..13759)
DNA (1122bp) protein (374aa)
Rod shape-determining protein RodA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y8P3_9SPHN
Rod shape-determining protein RodA {ECO:0000313|EMBL:AKH41630.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rod shape-determining protein RodA
SCN18_25_8_15_R2_B_scaffold_1122_13
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13756..15789)
DNA (2034bp) protein (678aa)
Putative penicillin-binding protein 2 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLR8_9SPHN
Beta-lactam-inducible penicillin-binding protein {ECO:0000313|EMBL:AKH41629.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
penicillin-binding protein
SCN18_25_8_15_R2_B_scaffold_1122_14
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15797..16351)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7C5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41628.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1122_15
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16351..17253)
DNA (903bp) protein (301aa)
Cell shape-determining protein MreC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A4D7_9SPHN
Cell shape-determining protein MreC {ECO:0000313|EMBL:AKH41627.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rod shape-determining protein MreC
SCN18_25_8_15_R2_B_scaffold_1122_16
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17288..18334)
DNA (1047bp) protein (349aa)
Rod shape-determining protein MreB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6F6_NOVAD
Rod shape-determining protein MreB {ECO:0000313|EMBL:AKH41626.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rod shape-determining protein MreB
SCN18_25_8_15_R2_B_scaffold_1122_17
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18516..20324
DNA (1809bp) protein (603aa)
DNA mismatch repair protein MutL n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y8N9_9SPHN
DNA mismatch repair protein MutL {ECO:0000313|EMBL:AKH41625.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
mutL; DNA mismatch repair protein
SCN18_25_8_15_R2_B_scaffold_1122_18
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20324..20839
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD1046
Uncharacterized protein {ECO:0000313|EMBL:AKH41624.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCN18_25_8_15_R2_B_scaffold_1122_19
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20836..21549)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD108A
NYN domain protein {ECO:0000313|EMBL:AKH41621.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1122_20
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21587..22240)
DNA (654bp) protein (218aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A874_9SPHN
SCN18_25_8_15_R2_B_scaffold_1122_21
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22298..23224
DNA (927bp) protein (309aa)
Lipoyl synthase {ECO:0000313|EMBL:AKH41619.1}; EC=2.8.1.8 {ECO:0000313|EMBL:AKH41619.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Lipoyl synthase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=LIPA_ERYLH
lipoyl synthase
SCN18_25_8_15_R2_B_scaffold_1122_22
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23224..23685
DNA (462bp) protein (154aa)
cyclase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E64881
Ribosome association toxin RatA {ECO:0000313|EMBL:AKH41618.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
oligoketide cyclase
SCN18_25_8_15_R2_B_scaffold_1122_23
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23646..24143)
DNA (498bp) protein (166aa)
Nicotinamide-nucleotide amidohydrolase PncC {ECO:0000313|EMBL:AKH41617.1}; EC=3.5.1.42 {ECO:0000313|EMBL:AKH41617.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
competence protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7B1
competence-damaged protein
SCN18_25_8_15_R2_B_scaffold_1122_24
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24216..25370)
DNA (1155bp) protein (385aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12)
Bifunctional enzyme IspD/IspF n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQJ7_9SPHN
Bifunctional enzyme IspD/IspF {ECO:0000313|EMBL:AKH41616.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCN18_25_8_15_R2_B_scaffold_1122_25
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25448..26464
DNA (1017bp) protein (339aa)
tRNA-dihydrouridine synthase C {ECO:0000313|EMBL:AKH41615.1}; EC=1.-.-.- {ECO:0000313|EMBL:AKH41615.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tRNA-dihydrouridine synthase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC57_9SPHN
tRNA-dihydrouridine synthase
SCN18_25_8_15_R2_B_scaffold_1122_26
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26461..27528
DNA (1068bp) protein (356aa)
Nitrogen regulation protein NR(II) {ECO:0000313|EMBL:AKH41614.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH41614.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.3.-)
Nitrogen regulation protein NtrB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZZ9_9SPHN
SCN18_25_8_15_R2_B_scaffold_1122_27
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27538..28947
DNA (1410bp) protein (470aa)
Nitrogen assimilation regulatory protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPV5_9SPHN
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:AKH41613.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
two component sigma-54 specific Fis family transcriptional regulator
Displaying 28 items

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