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SCN18_25_8_15_R2_B_scaffold_1612

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1612_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..84)
DNA (84bp) protein (28aa)
Putative transposase for insertion sequence element n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL16_9SPHN
putative transposase for insertion sequence element
Transposase {ECO:0000313|EMBL:EQB30892.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCN18_25_8_15_R2_B_scaffold_1612_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116..568)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCW7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD57546.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1612_3
Nitrosospira multiformis_SCNPILOT_SOLID_1_TRIM150_Nitrosospira_54_27, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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693..986
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALSr1 RepID=UPI0003739942
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ69975.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_25_8_15_R2_B_scaffold_1612_4
SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220, SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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983..1276
DNA (294bp) protein (98aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUS4_DELSC
RelE/StbE family addiction module toxin
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:AEF88012.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCN18_25_8_15_R2_B_scaffold_1612_5
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1273..1962
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Alteromonas sp. (strain SN2) RepID=F5Z883_ALTSS
Uncharacterized protein {ECO:0000313|EMBL:EZP82038.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1612_6
unknown

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2023..2235
DNA (213bp) protein (71aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1612_7
unknown

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2335..2580
DNA (246bp) protein (82aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1612_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3015..3446
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXE1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12111.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1612_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3590..5695
DNA (2106bp) protein (702aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNB8_9SPHN
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:EJU12110.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TRAG family protein
SCN18_25_8_15_R2_B_scaffold_1612_10
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

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5695..6105
DNA (411bp) protein (137aa)
Helix-turn-helix protein, CopG n=1 Tax=Sphingomonas sp. LH128 RepID=J8SGY3_9SPHN
Helix-turn-helix protein, CopG {ECO:0000313|EMBL:EJU12109.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
Helix-turn-helix protein, CopG
SCN18_25_8_15_R2_B_scaffold_1612_11
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6102..7079
DNA (978bp) protein (326aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Sphingomonas sp. LH128 RepID=J8VVQ6_9SPHN
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EJU12108.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer ATPase TrbB
SCN18_25_8_15_R2_B_scaffold_1612_12
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7081..7416
DNA (336bp) protein (112aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingomonas sp. LH128 RepID=J8VH28_9SPHN
conjugal transfer protein Trbc
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EJU12107.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCN18_25_8_15_R2_B_scaffold_1612_13
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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7416..7703
DNA (288bp) protein (96aa)
Conjugal transfer protein TrbD n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J889_9SPHN
Conjugal transfer protein TrbD {ECO:0000313|EMBL:EQB18199.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
putative conjugal transfer TrbD transmembrane protein
SCN18_25_8_15_R2_B_scaffold_1612_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7697..10165
DNA (2469bp) protein (823aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J245_9SPHN
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB18200.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
CagE TrbE VirB component of type IV transporter system conserved region
SCN18_25_8_15_R2_B_scaffold_1612_15
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10162..10893
DNA (732bp) protein (244aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZZ5_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EJU13613.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer protein TrbJ
SCN18_25_8_15_R2_B_scaffold_1612_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10921..12258
DNA (1338bp) protein (446aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingomonas sp. LH128 RepID=J8SLD7_9SPHN
Conjugal transfer protein TrbL {ECO:0000313|EMBL:EJU13614.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer protein TrbL
SCN18_25_8_15_R2_B_scaffold_1612_17
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12265..13092
DNA (828bp) protein (276aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSL3_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KKC25855.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
conjugal transfer protein TrbF
SCN18_25_8_15_R2_B_scaffold_1612_18
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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13089..14066
DNA (978bp) protein (326aa)
P-type conjugative transfer protein TrbG n=1 Tax=Sphingomonas sp. LH128 RepID=J8W1Q1_9SPHN
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:EJU13616.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer protein TrbG
SCN18_25_8_15_R2_B_scaffold_1612_19
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14063..15337
DNA (1275bp) protein (425aa)
Conjugation TrbI family protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VLI4_9SPHN
Conjugation TrbI family protein {ECO:0000313|EMBL:EJU13617.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
conjugation TrbI family protein
SCN18_25_8_15_R2_B_scaffold_1612_20
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15352..15573
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W001_9SPHN
Protein involved in integration/excision of ICE Tn4371 family {ECO:0000313|EMBL:KKC25866.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1612_21
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15570..15914
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SLE2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU13619.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1612_22
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15917..16141
DNA (225bp) protein (75aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287F272
Transcriptional regulator {ECO:0000313|EMBL:KKC27195.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1612_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16156..16902)
DNA (747bp) protein (249aa)
NADPH-dependent FMN reductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ29_SPHAL
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EZP81805.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
NADPH-dependent FMN reductase
SCN18_25_8_15_R2_B_scaffold_1612_24
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16899..17975)
DNA (1077bp) protein (359aa)
Arsenite export protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y3D3_9SPHN
Arsenic transporter {ECO:0000313|EMBL:AKH18980.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
bile acid:sodium symporter
SCN18_25_8_15_R2_B_scaffold_1612_25
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17983..18411)
DNA (429bp) protein (143aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Arsenate reductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8I6_SPHWW
arsenate reductase
SCN18_25_8_15_R2_B_scaffold_1612_26
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18401..18928)
DNA (528bp) protein (176aa)
arsC; arsenate reductase / phosphotyrosine protein phosphatase (EC:1.20.4.1 3.1.3.48)
ArsR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8V8N2_9SPHN
ArsR family transcriptional regulator {ECO:0000313|EMBL:KIY09833.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCN18_25_8_15_R2_B_scaffold_1612_27
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18925..19278)
DNA (354bp) protein (118aa)
Transcriptional regulator, ArsR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ25_SPHAL
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABF54247.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCN18_25_8_15_R2_B_scaffold_1612_28
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19974..20195)
DNA (222bp) protein (74aa)
Resolvase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8D0_NOVAD
resolvase-like protein
Resolvase-like protein {ECO:0000313|EMBL:ABD25893.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_25_8_15_R2_B_scaffold_1612_29
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20470..23208
DNA (2739bp) protein (913aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI0003644DC8
G8 domain protein {ECO:0000313|EMBL:AKH44329.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transmembrane domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1612_30
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23635..26217
DNA (2583bp) protein (861aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI0003644DC8
G8 domain protein {ECO:0000313|EMBL:AKH44329.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transmembrane domain-containing protein
Displaying items 1-30 of 31 in total

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