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SCN18_25_8_15_R2_B_scaffold_1466

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1466_1
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(695..907)
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1WAZ9_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34090.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_25_8_15_R2_B_scaffold_1466_2
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1034..1909
DNA (876bp) protein (292aa)
methylglyoxal synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FFB0B
Methylglyoxal synthase {ECO:0000313|EMBL:GAD22447.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1466_3
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1909..4074
DNA (2166bp) protein (722aa)
Penicillin-binding protein 1C {ECO:0000313|EMBL:ADV00933.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ADV00933.1};; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
penicillin-binding protein 1c (EC:2.4.1.129)
Penicillin-binding protein 1C n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB2_ALIDB
SCN18_25_8_15_R2_B_scaffold_1466_4
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4139..4660
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZB1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83641.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_1466_5
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4660..5895
DNA (1236bp) protein (412aa)
Diguanylate cyclase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB0_ALIDB
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADV00931.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1466_6
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5919..6428
DNA (510bp) protein (170aa)
OmpA/MotB domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA9_ALIDB
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:AEB83643.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_1466_7
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6520..7692
DNA (1173bp) protein (391aa)
l-lactate dehydrogenase (cytochrome) (EC:1.1.2.3)
L-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:AEB83644.1}; EC=1.1.2.3 {ECO:0000313|EMBL:AEB83644.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-lactate dehydrogenase (Cytochrome) n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA8_ALIDB
SCN18_25_8_15_R2_B_scaffold_1466_8
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7865..8797
DNA (933bp) protein (311aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83645.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_1466_9
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8801..10645)
DNA (1845bp) protein (615aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB83646.1}; EC=1.3.99.10 {ECO:0000313|EMBL:AEB83646.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC72_ALIDK
SCN18_25_8_15_R2_B_scaffold_1466_10
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10677..11954)
DNA (1278bp) protein (426aa)
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA5_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
CoA-transferase family III family protein 50 {ECO:0000313|EMBL:GAO24508.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1466_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11951..12919)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZA4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00925.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1466_12
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13050..13943
DNA (894bp) protein (298aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA3_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00924.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1466_13
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14019..15209
DNA (1191bp) protein (397aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
DNA polymerase IV n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA2_ALIDB
SCN18_25_8_15_R2_B_scaffold_1466_14
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15369..16931
DNA (1563bp) protein (521aa)
PAS sensor protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA1_ALIDB
Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor {ECO:0000313|EMBL:AEB83651.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_1466_15
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16961..17806)
DNA (846bp) protein (282aa)
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA0_ALIDB
SCN18_25_8_15_R2_B_scaffold_1466_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17865..18719)
DNA (855bp) protein (285aa)
procollagen-proline dioxygenase (EC:1.14.11.2)
Procollagen-proline dioxygenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ99_ALIDB
Procollagen-proline dioxygenase {ECO:0000313|EMBL:GAO24502.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1466_17
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18716..19489)
DNA (774bp) protein (258aa)
UPF0246 protein Alide_3197 n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ98_ALIDB
hypothetical protein
UPF0246 protein Alide2_1250 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_1466_18
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19746..21812)
DNA (2067bp) protein (689aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Ribonuclease E n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ97_ALIDB
ribonuclease, rne/rng family
Displaying 18 items

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