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SCN18_25_8_15_R4_B_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 267 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_42_1
unknown

Not on your lists

comp(3..65)
DNA (63bp) protein (21aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_42_2
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(139..1233)
DNA (1095bp) protein (365aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQM8_PSEUU
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
SCN18_25_8_15_R4_B_scaffold_42_3
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1230..1763)
DNA (534bp) protein (178aa)
Transcriptional repressor NrdR n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQM6_PSEUU
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
ATP-cone domain-containing protein
SCN18_25_8_15_R4_B_scaffold_42_4
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1773..2315)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQM5_PSEUU
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCN18_25_8_15_R4_B_scaffold_42_5
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2339..3493)
DNA (1155bp) protein (385aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AD1F
SCN18_25_8_15_R4_B_scaffold_42_6
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3526..4539)
DNA (1014bp) protein (338aa)
Transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSD2_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIM02374.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
SCN18_25_8_15_R4_B_scaffold_42_7
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4633..5658
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSD1_9GAMM
membrane protein
Membrane protein {ECO:0000313|EMBL:AHX14466.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCN18_25_8_15_R4_B_scaffold_42_8
CN-SCN_Rhodanobacter_45x, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5725..6168)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQM3_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV26472.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCN18_25_8_15_R4_B_scaffold_42_9
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6389..8053
DNA (1665bp) protein (555aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003024CEA
ABC transporter related protein {ECO:0000313|EMBL:ADV26471.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
ABC transporter
SCN18_25_8_15_R4_B_scaffold_42_10
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8102..8932
DNA (831bp) protein (277aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ93_9GAMM
Orotidine 5'-phosphate decarboxylase
SCN18_25_8_15_R4_B_scaffold_42_11
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8956..9933
DNA (978bp) protein (326aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lipoyl synthase n=2 Tax=Rhodanobacter denitrificans RepID=I4WS70_9GAMM
lipoate synthase
SCN18_25_8_15_R4_B_scaffold_42_12
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9967..10407)
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RNW7_COMTE
Putative uncharacterized protein {ECO:0000313|EMBL:EHN66013.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_42_13
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10435..11298)
DNA (864bp) protein (288aa)
glycosyl transferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E37ACB
Glycosyl transferase {ECO:0000313|EMBL:KGQ20856.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
family 2 glycosyl transferase
SCN18_25_8_15_R4_B_scaffold_42_14
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11295..12149)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CCN1_XANCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL05744.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCN18_25_8_15_R4_B_scaffold_42_15
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12146..14299)
DNA (2154bp) protein (718aa)
Type II secretory pathway component n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z658_XANCT
General secretion pathway protein GspD {ECO:0000313|EMBL:KGM55165.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
general secretion pathway protein GspD
SCN18_25_8_15_R4_B_scaffold_42_16
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14319..15050)
DNA (732bp) protein (244aa)
General secretion pathway protein N n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW86_PSEUP
Uncharacterized protein {ECO:0000313|EMBL:KGM55181.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
general secretion pathway protein N
SCN18_25_8_15_R4_B_scaffold_42_17
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15040..15672)
DNA (633bp) protein (211aa)
General secretion pathway protein m n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW85_PSEUP
General secretion pathway protein M {ECO:0000313|EMBL:KGQ20851.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
general secretion pathway protein m
SCN18_25_8_15_R4_B_scaffold_42_18
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15669..16802)
DNA (1134bp) protein (378aa)
General secretion pathway protein L n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW84_PSEUP
Uncharacterized protein {ECO:0000313|EMBL:KGM55182.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
general secretion pathway protein L
SCN18_25_8_15_R4_B_scaffold_42_19
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16799..17629)
DNA (831bp) protein (277aa)
Type II secretion system protein K n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW83_PSEUP
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
general secretion pathway protein K
SCN18_25_8_15_R4_B_scaffold_42_20
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17626..18252)
DNA (627bp) protein (209aa)
General secretion pathway protein J n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZIT1_XANCT
General secretion pathway protein J {ECO:0000313|EMBL:KGQ20848.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
general secretion pathway protein J
SCN18_25_8_15_R4_B_scaffold_42_21
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18249..18668)
DNA (420bp) protein (140aa)
general secretion pathway protein I n=1 Tax=Xanthomonas sacchari RepID=UPI000263197E
General secretion pathway protein I {ECO:0000313|EMBL:KGQ20847.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
general secretion pathway protein GspI
SCN18_25_8_15_R4_B_scaffold_42_22
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18665..19141)
DNA (477bp) protein (159aa)
general secretion pathway protein H n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI0003812314
general secretion pathway protein GspH
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_42_23
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19162..19620)
DNA (459bp) protein (153aa)
General secretion pathway protein G n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW79_PSEUP
general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:AER55192.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCN18_25_8_15_R4_B_scaffold_42_24
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19673..20890)
DNA (1218bp) protein (406aa)
General secretion pathway protein F n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW78_PSEUP
General secretion pathway protein F {ECO:0000313|EMBL:KGQ20844.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
general secretion pathway protein F
SCN18_25_8_15_R4_B_scaffold_42_25
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20895..22610)
DNA (1716bp) protein (572aa)
general secretion pathway protein E n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030B2843
General secretion pathway protein GspE {ECO:0000313|EMBL:KGM55155.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
xpsE; general secretion pathway protein E
SCN18_25_8_15_R4_B_scaffold_42_26
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22779..26765)
DNA (3987bp) protein (1329aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
phosphoribosylformylglycinamidine synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000300157A
purL; phosphoribosylformylglycinamidine synthase
SCN18_25_8_15_R4_B_scaffold_42_27
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26839..27636)
DNA (798bp) protein (266aa)
chitinase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036B8C9F
Thiol:disulfide interchange protein DsbC {ECO:0000313|EMBL:KGQ20839.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
disulfide bond formation protein DsbC
SCN18_25_8_15_R4_B_scaffold_42_28
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27728..28690)
DNA (963bp) protein (321aa)
tyrosine recombinase XerD n=1 Tax=Xanthomonas arboricola RepID=UPI0003632EB3
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
xerD; site-specific tyrosine recombinase XerD
SCN18_25_8_15_R4_B_scaffold_42_29
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28738..29172
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SX22_XANCT
Uncharacterized protein {ECO:0000313|EMBL:KGM52965.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
RDD domain containing protein
SCN18_25_8_15_R4_B_scaffold_42_30
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29183..30280)
DNA (1098bp) protein (366aa)
membrane protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002FA9D3A
transmembrane permease
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
Displaying items 1-30 of 267 in total

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