ggKbase home page

SCN18_25_8_15_R4_B_scaffold_632

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_632_1
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..143
DNA (141bp) protein (47aa)
Transposase, IS204/IS1001/IS1096/IS1165 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46MB8_CUPPJ
Uncharacterized protein {ECO:0000313|EMBL:KFN46530.1}; Flags: Fragment;; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
IS204/IS1001/IS1096/IS1165 transposase
SCN18_25_8_15_R4_B_scaffold_632_2
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140..769
DNA (630bp) protein (210aa)
transposase IS1404 n=1 Tax=Dyella ginsengisoli RepID=UPI00034491EE
Transposase {ECO:0000313|EMBL:KGM51604.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
integrase catalytic subunit
SCN18_25_8_15_R4_B_scaffold_632_3
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(891..2495)
DNA (1605bp) protein (535aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQ16_PSEUP
Uncharacterized protein {ECO:0000313|EMBL:KGQ17807.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_632_4
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2506..4062)
DNA (1557bp) protein (519aa)
Tetratricopeptide repeat protein,sulfotransferase family protein id=2536436 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas vesicatoria genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
TPR-repeat-containing protein
Tax=GWF1_Xanthomonadales_69_6_curated
SCN18_25_8_15_R4_B_scaffold_632_5
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4186..7212)
DNA (3027bp) protein (1009aa)
membrane protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B33F7A
Oar protein {ECO:0000313|EMBL:KGQ18788.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Oar protein
SCN18_25_8_15_R4_B_scaffold_632_6
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7484..9238)
DNA (1755bp) protein (585aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1J9_9GAMM
phosphoenolpyruvate carboxykinase
SCN18_25_8_15_R4_B_scaffold_632_7
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9326..9901)
DNA (576bp) protein (192aa)
Transcriptional regulator transcription regulator protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQ87_PSEUP
transcriptional regulator transcription regulator protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_632_8
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10072..12534
DNA (2463bp) protein (821aa)
Acyl-CoA dehydrogenase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7H9Y5_XANCT
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ELQ14875.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
fadE; acyl-CoA dehydrogenase
SCN18_25_8_15_R4_B_scaffold_632_9
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12555..13409)
DNA (855bp) protein (285aa)
DNA-O6-methylguanine--protein-cysteine S-methyltransferase {ECO:0000313|EMBL:ABL72303.1}; EC=2.1.1.63 {ECO:0000313|EMBL:ABL72303.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
DNA-O6-methylguanine--protein-cysteine S-methyltransferase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B9V9_PARDP
methylated-DNA--protein-cysteine methyltransferase
SCN18_25_8_15_R4_B_scaffold_632_10
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13485..14129)
DNA (645bp) protein (215aa)
2OG-Fe(II) oxygenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZJ2_ALIDB
2OG-Fe(II) oxygenase
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:ADU98539.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R4_B_scaffold_632_11
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14126..15058)
DNA (933bp) protein (311aa)
Protoheme IX farnesyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPU0_PSEUU
protoheme IX farnesyltransferase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_632_12
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15060..16217)
DNA (1158bp) protein (386aa)
cytochrome oxidase assembly protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FB358F
Cytochrome oxidase assembly protein {ECO:0000313|EMBL:KGQ18318.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
cytochrome oxidase assembly
SCN18_25_8_15_R4_B_scaffold_632_13
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16223..16819)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A849
Uncharacterized protein {ECO:0000313|EMBL:KGQ18317.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_632_14
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16816..17574)
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW50_PSEUP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AER57708.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCN18_25_8_15_R4_B_scaffold_632_15
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17638..17865
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=I0KIR2_STEMA
Membrane protein {ECO:0000313|EMBL:EYR66455.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_632_16
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17971..18861)
DNA (891bp) protein (297aa)
Cytochrome C oxidase subunit III n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW52_PSEUP
Cytochrome c oxidase polypeptide III {ECO:0000313|EMBL:KGQ18315.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
cytochrome C oxidase subunit III
SCN18_25_8_15_R4_B_scaffold_632_17
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18890..19462)
DNA (573bp) protein (191aa)
Cytochrome c oxidase assembly protein CtaG/Cox11 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPT4_PSEUU
cytochrome C oxidase assembly protein CtaG/Cox11
Cytochrome c oxidase assembly protein CtaG/Cox11 {ECO:0000313|EMBL:ADV26039.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCN18_25_8_15_R4_B_scaffold_632_18
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19465..19599)
DNA (135bp) protein (45aa)
SCN18_25_8_15_R4_B_scaffold_632_19
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19617..21239)
DNA (1623bp) protein (541aa)
cytochrome oxidase subunit I n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EA84BF
Cytochrome oxidase subunit I {ECO:0000313|EMBL:KGM54456.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
cytochrome C oxidase subunit I
SCN18_25_8_15_R4_B_scaffold_632_20
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21272..22207)
DNA (936bp) protein (312aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
cytochrome C oxidase, subunit II protein (EC:1.9.3.1)
cytochrome B5 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000307BBFE
SCN18_25_8_15_R4_B_scaffold_632_21
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22444..25650
DNA (3207bp) protein (1069aa)
Pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:EYR66461.1}; EC=1.2.1.88 {ECO:0000313|EMBL:EYR66461.1};; EC=1.5.99.8 {ECO:0000313|EMBL:EYR66461.1};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Probable bifunctional protein puta [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate] n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UBE4_XANAP
integrase
SCN18_25_8_15_R4_B_scaffold_632_22
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25760..27121)
DNA (1362bp) protein (454aa)
Outer membrane protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L1L5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM54388.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
aromatic hydrocarbon degradation membrane protein
SCN18_25_8_15_R4_B_scaffold_632_23
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27309..28001
DNA (693bp) protein (231aa)
Rhomboid family protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW59_PSEUP
Membrane protein {ECO:0000313|EMBL:KGM51088.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
rhomboid family protein
SCN18_25_8_15_R4_B_scaffold_632_24
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27995..29428)
DNA (1434bp) protein (478aa)
Putative periplasmic carboxyl-terminal protease signal peptide protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UB33_XANAP
periplasmic carboxyl-terminal protease precursor signal peptide protein
Putative periplasmic carboxyl-terminal protease signal peptide protein {ECO:0000313|EMBL:CBA14928.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCN18_25_8_15_R4_B_scaffold_632_25
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29617..30831)
DNA (1215bp) protein (405aa)
peptidase M23 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000369C1C7
Peptidase M23 {ECO:0000313|EMBL:KGQ18303.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
peptidase M23
SCN18_25_8_15_R4_B_scaffold_632_26
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30831..32375)
DNA (1545bp) protein (515aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW63_PSEUP
phosphoglyceromutase
SCN18_25_8_15_R4_B_scaffold_632_27
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32481..33161
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B7A35B
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCN18_25_8_15_R4_B_scaffold_632_28
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33221..34954
DNA (1734bp) protein (578aa)
Peptidase n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CGQ5_XANCA
peptidase
Peptidase {ECO:0000313|EMBL:AEL04960.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCN18_25_8_15_R4_B_scaffold_632_29
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35009..35401
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW65_PSEUP
Membrane protein {ECO:0000313|EMBL:KGO97972.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
hypothetical protein
Displaying 29 items

View Taxonomy