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SCN18_25_8_15_R4_B_scaffold_117_71

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 69607..70440

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.1
  • Coverage: 279.0
  • Bit_score: 367
  • Evalue 1.50e-98
shikimate 5-dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B727F2 similarity UNIREF
DB: UNIREF100
  • Identity: 65.5
  • Coverage: 278.0
  • Bit_score: 344
  • Evalue 7.60e-92
aroE; shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 65.7
  • Coverage: 283.0
  • Bit_score: 342
  • Evalue 8.20e-92

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 834
ATGCGCCGCTATGCCGTGTTCGGATCGCCCGTCGCGCACTCGCAGTCGCCGCGCATCCACGCCGCGTTCGCGCGGCAGGCCGGAATCGCACTCGAGTACGTGGCGATCGAGGCCGGCCATGCCGATTTCGCCTCCCGTCTCGCCGCCAGCGGCGTGGACGGCGCCAGCGTCACCCTGCCGCTGAAGGAGGACGCCTTCGCGCTGTGCGGGGAGCGCACCAGCGCGCGGGCGCAGCGCGCCGGCGCGGTGAACACGCTGATCCGCGAGGGTGCGCACTGGCACGGCGACAACACCGACGGCCTCGGTCTGGTGCGCGACCTGACCGAGCGCCACGGCCTCGACCTGCGCGATCGCCGCGTGCTGCTGCTGGGCGCCGGCGGGGCCGCGCGCGGGGTCGCCCCCGCGCTGCTGGACGCCGGCATCCGCGCGCTCTACATCGCCAACCGCACCGCGGCCCGCGCCGACGCGCTGGCGGACGCGCTGGGCGAGCCGGCGCGGGTGCATCCGCGCGGCTGGGACGATCTGCCCGCGCTGGGCGAATTCGACCTGCTGGTGAACGCCACCTCCGCCACCCGCGGCGGCGCGCTGCCGGCGCTGCCGATGGCGCTGGCGGCGCCGCGCAGCGTGGCGGTGGACCTGGGCTATGGCGAGGCGGCGGTGGCCTTCCTCGCCTGGGCGCGCGCCGCCGGCGGCGCGCAGGCGCTGGACGGGCTGGGCATGCTGGTGGAACAGGCCGCGGAAAGCTTCCTGCTCTGGCACGGCGTGCGCCCGGACACCGACCCGGTCTATGCACAGCTGCGCGCGCAGGCCGACGCGCTGGTCAGTGCGGACTGA
PROTEIN sequence
Length: 278
MRRYAVFGSPVAHSQSPRIHAAFARQAGIALEYVAIEAGHADFASRLAASGVDGASVTLPLKEDAFALCGERTSARAQRAGAVNTLIREGAHWHGDNTDGLGLVRDLTERHGLDLRDRRVLLLGAGGAARGVAPALLDAGIRALYIANRTAARADALADALGEPARVHPRGWDDLPALGEFDLLVNATSATRGGALPALPMALAAPRSVAVDLGYGEAAVAFLAWARAAGGAQALDGLGMLVEQAAESFLLWHGVRPDTDPVYAQLRAQADALVSAD*