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SCN18_25_8_15_R4_B_scaffold_71_449

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 474412..475755

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.9
  • Coverage: 443.0
  • Bit_score: 647
  • Evalue 1.20e-182
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G921_XANCT similarity UNIREF
DB: UNIREF100
  • Identity: 73.4
  • Coverage: 443.0
  • Bit_score: 643
  • Evalue 9.80e-182
23S rRNA methyltransferase similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 441.0
  • Bit_score: 638
  • Evalue 1.20e-180

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1344
TTGGCCCGCCTCGACCAATCCCCCAAGACCCTCTCCATCCTCGACCTCAGCCATGACGGCCGCGGCGTGGCGCGCTGGCCGGACGGTCATGCGCAGGCCGGCAAGACCGTGTTCGTGTCCGGCGCGCTGCCGGGCGAGACCGTGCTGGCCGAGCAGACCGCGCGCAGCCGGCATTTCGACGCGGCGCGCACGCGCGAGGTGCTGATCGCTTCGCCGGATCGGGTGTTGCCGCGCTGTCCGCATTTCGGCACCTGCGGCGGCTGCGTGCTGCAGCACCTGGCCGAGGACCGCCAGATCGCCTACAAGCAGCAGGTGCTGCTGGACAACCTGCAGCGGATCGGCCACGTGGCGCCGCCCGCCGTGCTGCCGCCGCTGCGCGGCGAGGCCTGGGGCTACCGGCGCAAGGGGCGGTTCTCGGTGCGCCGGGTGGAGAAGAAGGACAAGACCCTGGTCGGCTTTCGCGAGCAGGACCCGCGCTTCGTGGCCGACCTGTCCGAATGCCACGTCGTGGTGCCGCAGCTGGGCTTCAAGCTGCAGGCGCTGGGCGCGCTGGTGGACGCCCTGGATGCGCGGCGCGACATCCCGCAGATCGAGTTCATCGCCGGCGATGCCGCCACCGCGCTGGTATTCCGCCACCTGCAGCCGCTGTCCGCGGCCGACCGTGAGCGCCTGGCCGGGTTCGGGCAGCAGCACGGGTTCGCGATCTACCTGCAGCCGGGCGGGGTGGAGTCGGTGCATCCGCTGGGCGACGACGCGGCGCTGGCGTTCCGCCTGCCGCAATGGGACATCACCCTGCAGTTCCGCCCGCTGGACTTCATCCAGGTCAATGCGCGCCTGAACGAGGCGATGATCGCGCGCGCGCTGGAACTGCTGGAGGTGCAGCCCGGCGAGCGCGTGCTGGACCTGTTCTGCGGGCTGGGCAACTTCACCCTGCCGCTGGCGCGGATGGCCGGCGACGGCGCGGTGGTCGGGGTCGAGGGCGATGCCGGGCTGGTGGCACGCGCGCGCGCCAACGCCGAGCGCAACGGCCTGCGCAATGTGCAGTTCCATGCGGCAGACCTCGCGCAGGACCTGGCCGGCCAGCCGTGGCTCAAGGCCGGCTTCGACCGGCTGCTGCTGGACCCGGCGCGCGCCGGCGCGATCGAGGTGCTGCGCCAGCTGCCGCTGAAGGGCCTGAAGCGCATCGTGTACGTCAGCTGCCATCCCGGCTCGCTGGCGCGCGACGCCGGCTGGCTGGTGAACGAGGCCGGCTGGAGGCTGCGCGAGGCGGGCGTGATGGACATGTTCCCGCATACCGCGCACGTCGAGTCGATCGCGGTGTTCGATCCGCCGCGCCGCGACTGA
PROTEIN sequence
Length: 448
LARLDQSPKTLSILDLSHDGRGVARWPDGHAQAGKTVFVSGALPGETVLAEQTARSRHFDAARTREVLIASPDRVLPRCPHFGTCGGCVLQHLAEDRQIAYKQQVLLDNLQRIGHVAPPAVLPPLRGEAWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSECHVVVPQLGFKLQALGALVDALDARRDIPQIEFIAGDAATALVFRHLQPLSAADRERLAGFGQQHGFAIYLQPGGVESVHPLGDDAALAFRLPQWDITLQFRPLDFIQVNARLNEAMIARALELLEVQPGERVLDLFCGLGNFTLPLARMAGDGAVVGVEGDAGLVARARANAERNGLRNVQFHAADLAQDLAGQPWLKAGFDRLLLDPARAGAIEVLRQLPLKGLKRIVYVSCHPGSLARDAGWLVNEAGWRLREAGVMDMFPHTAHVESIAVFDPPRRD*