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SCN18_25_8_15_R4_B_scaffold_1176

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_1176_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..425)
DNA (423bp) protein (141aa)
N utilization substance protein B homolog n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCC3_9RHOB
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
nusB; transcription antitermination protein NusB
SCN18_25_8_15_R4_B_scaffold_1176_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(422..868)
DNA (447bp) protein (149aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB29_PHEZH
ribH; riboflavin synthase subunit beta
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_25_8_15_R4_B_scaffold_1176_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(871..1995)
DNA (1125bp) protein (375aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX86_PARL1
3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:ABS64519.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_25_8_15_R4_B_scaffold_1176_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1992..2585)
DNA (594bp) protein (198aa)
ribE; riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ACI98743.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ACI98743.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Riboflavin synthase, alpha subunit n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMS7_RHOCS
SCN18_25_8_15_R4_B_scaffold_1176_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2713..3807)
DNA (1095bp) protein (365aa)
ribD; riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMS8_RHOCS
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCN18_25_8_15_R4_B_scaffold_1176_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3804..4298)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0ASA3_MARMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI64834.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCN18_25_8_15_R4_B_scaffold_1176_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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4483..4899
DNA (417bp) protein (139aa)
SCN18_25_8_15_R4_B_scaffold_1176_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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5105..5497
DNA (393bp) protein (131aa)
SCN18_25_8_15_R4_B_scaffold_1176_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5837..6301)
DNA (465bp) protein (155aa)
Transcriptional repressor NrdR n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL27_9PROT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
ATP-cone domain-containing protein
SCN18_25_8_15_R4_B_scaffold_1176_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6311..7606)
DNA (1296bp) protein (432aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
Serine hydroxymethyltransferase n=2 Tax=Labrenzia RepID=U7FKR4_9RHOB
glyA; serine hydroxymethyltransferase 1
SCN18_25_8_15_R4_B_scaffold_1176_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7989..8465
DNA (477bp) protein (159aa)
Predicted transcriptional regulator n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4T4_MAGSA
transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:BAE51141.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_25_8_15_R4_B_scaffold_1176_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8594..9811)
DNA (1218bp) protein (406aa)
5-aminolevulinate synthase (EC:2.3.1.37)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI0003794ED6
Tax=BJP_IG2102_Porphyrobacter_62_18
SCN18_25_8_15_R4_B_scaffold_1176_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9947..10621)
DNA (675bp) protein (225aa)
Putative membrane protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HT88_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM35940.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative transmembrane protein
SCN18_25_8_15_R4_B_scaffold_1176_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10939..11439)
DNA (501bp) protein (167aa)
Transcriptional regulator, MarR family n=1 Tax=Maricaulis maris (strain MCS10) PF4_MARMM">RepID=Q0APF4_MARMM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CDO61357.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
MarR family transcriptional regulator
SCN18_25_8_15_R4_B_scaffold_1176_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11556..12446)
DNA (891bp) protein (297aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKC2_TISMK
mmsB; 3-hydroxyisobutyrate dehydrogenase
SCN18_25_8_15_R4_B_scaffold_1176_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12471..13517)
DNA (1047bp) protein (349aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX73_PARL1
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:GAK44125.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
enoyl-CoA hydratase/isomerase
SCN18_25_8_15_R4_B_scaffold_1176_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13514..14137)
DNA (624bp) protein (208aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUM7_9PROT
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EDP63785.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
acyl-CoA dehydrogenase domain-containing protein
Displaying 17 items

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