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SCN18_25_8_15_R4_B_scaffold_891

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_891_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..462
DNA (462bp) protein (154aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Delta-aminolevulinic acid dehydratase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX71_PARL1
delta-aminolevulinic acid dehydratase
SCN18_25_8_15_R4_B_scaffold_891_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(474..1052)
DNA (579bp) protein (193aa)
Transcriptional regulator n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9FDU2_9CYAN
Transcriptional regulator {ECO:0000313|EMBL:EKU99495.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
Transcriptional regulator, TetR family
SCN18_25_8_15_R4_B_scaffold_891_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1052..1933)
DNA (882bp) protein (294aa)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUM0_RHOP2
3-hydroxyisobutyrate dehydrogenase
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:ABD08090.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_8_15_R4_B_scaffold_891_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1930..3477)
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318DCB4
Multidrug resistance efflux pump EmrB/QacA {ECO:0000313|EMBL:GAN78804.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative drug resistance transporter
SCN18_25_8_15_R4_B_scaffold_891_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3498..4634)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003659B72
HlyD family secretion protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:EGO95762.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCN18_25_8_15_R4_B_scaffold_891_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4638..5147)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D526AA
Transcriptional regulator, MarR family protein
Transcriptional regulator, MarR family protein {ECO:0000313|EMBL:AHJ63975.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCN18_25_8_15_R4_B_scaffold_891_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5439..6734
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0D545_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ83525.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_891_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6796..7272)
DNA (477bp) protein (159aa)
Flavin reductase domain protein FMN-binding n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX62_PARL1
flavin reductase domain-containing protein
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:ABS64495.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_25_8_15_R4_B_scaffold_891_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7392..8327
DNA (936bp) protein (312aa)
chemotaxis protein MotB n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039C85C9
Chemotaxis MotB protein {ECO:0000313|EMBL:EAP90883.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
OmpA/MotB domain-containing protein
SCN18_25_8_15_R4_B_scaffold_891_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8409..9140
DNA (732bp) protein (244aa)
arginyltransferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QGT2_BREDI
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCN18_25_8_15_R4_B_scaffold_891_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9141..10850)
DNA (1710bp) protein (570aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Methionine--tRNA ligase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8J4_PHEZH
metG; methionyl-tRNA synthetase
SCN18_25_8_15_R4_B_scaffold_891_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11277..11987
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Thauera sp. 27 RepID=N6YCQ2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO77769.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_891_trna_1
unknown

Not on your lists

12119..12191
DNA (73bp)
transferRNA Thr
SCN18_25_8_15_R4_B_scaffold_891_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12281..13219
DNA (939bp) protein (313aa)
Oxidoreductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QF69_9BRAD
oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCN18_25_8_15_R4_B_scaffold_891_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13337..15073)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NRA6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV44687.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
Sel1 domain-containing protein
SCN18_25_8_15_R4_B_scaffold_891_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15180..16031)
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium Bio2 RepID=B2BK99_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ABU51088.1}; TaxID=460936 species="Bacteria; environmental samples.;" source="uncultured bacterium Bio2.;"
conserved membrane hypothetical protein
SCN18_25_8_15_R4_B_scaffold_891_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16035..16361)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium Bio2 RepID=B2BK98_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ABU51087.1}; TaxID=460936 species="Bacteria; environmental samples.;" source="uncultured bacterium Bio2.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_891_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16924..17712)
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISL0_RHOP2
Uncharacterized protein {ECO:0000313|EMBL:KKN87097.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_891_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17718..18635)
DNA (918bp) protein (306aa)
SCN18_25_8_15_R4_B_scaffold_891_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18632..20410)
DNA (1779bp) protein (593aa)
glycosyltransferase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00035DB5E0
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AJC45944.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
SCN18_25_8_15_R4_B_scaffold_891_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20576..21877)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037A0A12
Luciferase family protein {ECO:0000313|EMBL:GAK45994.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
luciferase family protein
SCN18_25_8_15_R4_B_scaffold_891_21
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21889..22362)
DNA (474bp) protein (158aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWN9_PARL1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS64322.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 22 items

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