ggKbase home page

SCN18_25_8_15_R4_B_scaffold_1163_9

Organism: SCN18_25_8_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(7622..8359)

Top 3 Functional Annotations

Value Algorithm Source
truA; tRNA pseudouridine synthase A (EC:5.4.99.12) similarity KEGG
DB: KEGG
  • Identity: 65.3
  • Coverage: 245.0
  • Bit_score: 320
  • Evalue 2.30e-85
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:CCB63875.1};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.3
  • Coverage: 245.0
  • Bit_score: 320
  • Evalue 1.10e-84
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBI5_HYPSM similarity UNIREF
DB: UNIREF100
  • Identity: 65.3
  • Coverage: 245.0
  • Bit_score: 320
  • Evalue 8.00e-85

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 738
ATGCCGCGCTACCGCCTGACGCTCGAATATGATGGCGCGCCCTTTGTCGGCTTCCAGCGCCAGAACAATGGCCCCTCGGTGCAGGGTGCGCTGGAAGACGCCATTGAAAAGCTCTCAGCCCAGCGCGTCACCGTGATGGCGGCGGGCCGCACCGATGCCGGTGTCCATGCGCTGGCGCAGGTGGTGCATTTCGATCTGGAAAAAACCTATGTGGCCGAAAAGGTGCGCGATGCACTGAACTTCCACCTGCGGCCCAATCCGGTGTCGGTGCTGGATGCGGTGGTTGCGGCGCCCGATTTCCACGCCCGTTTTCAGGCCAGGGGCCGCCATTATCTCTACCGCATTCTCTGCCGCACCGCGCCGCCCGCCATCGACCGTGGCCGGGTCTGGCATGTCATGCACGATCTCGATTGGCAGGCGATGCACCGCGCGGCACAGGTGCTTGTCGGCCATCATGATTTCACCACCTTCCGCGCCACCAATTGCCAGGCCAAATCGCCGATGAAGACGCTGGATCGTCTGGCGGTTGAACCGGCGGGCGCGGAAATTCACATCCATGCCGATGCGCGCAGCTTCCTGCATCATCAGGTGCGCTCGATGGTGGGGTCGCTGAAACTGGTGGGGGAGGGCAAGTGGGACGAAGCCCGCCTTGCCGCCGCGCTGGCGGCGCGCGATCGTACCGCCTGCGGTCCGGTGGCACCGGCCGAAGGGCTTTATCTCACCGCTGTTGATTACTGA
PROTEIN sequence
Length: 246
MPRYRLTLEYDGAPFVGFQRQNNGPSVQGALEDAIEKLSAQRVTVMAAGRTDAGVHALAQVVHFDLEKTYVAEKVRDALNFHLRPNPVSVLDAVVAAPDFHARFQARGRHYLYRILCRTAPPAIDRGRVWHVMHDLDWQAMHRAAQVLVGHHDFTTFRATNCQAKSPMKTLDRLAVEPAGAEIHIHADARSFLHHQVRSMVGSLKLVGEGKWDEARLAAALAARDRTACGPVAPAEGLYLTAVDY*