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SCN18_25_8_15_R4_B_scaffold_1163

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_1163_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1..780
DNA (780bp) protein (260aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
argB; acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NRY5_AZOS1
SCN18_25_8_15_R4_B_scaffold_1163_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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777..1817
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C544_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ46993.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_1163_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1796..3055)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT5_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDO58274.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
SCN18_25_8_15_R4_B_scaffold_1163_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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3193..3900
DNA (708bp) protein (236aa)
HAD family hydrolase n=1 Tax=Sphingobium baderi LL03 RepID=T0G8K3_9SPHN
HAD family hydrolase {ECO:0000313|EMBL:EQB00076.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
pyrimidine 5-nucleotidase
SCN18_25_8_15_R4_B_scaffold_1163_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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3901..4725
DNA (825bp) protein (275aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUN9_9RHIZ
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
SCN18_25_8_15_R4_B_scaffold_1163_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4703..5593)
DNA (891bp) protein (297aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T463_CAUSK
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABZ73947.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_25_8_15_R4_B_scaffold_1163_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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5656..6819
DNA (1164bp) protein (388aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
Succinyl-diaminopimelate desuccinylase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8G9_AZOL4
dapE; Succinyl-diaminopimelate desuccinylase (SDAP)
SCN18_25_8_15_R4_B_scaffold_1163_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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6816..7628
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Glutamate racemase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPQ4_PARL1
glutamate racemase
SCN18_25_8_15_R4_B_scaffold_1163_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7622..8359)
DNA (738bp) protein (246aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:CCB63875.1};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBI5_HYPSM
SCN18_25_8_15_R4_B_scaffold_1163_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8359..9273)
DNA (915bp) protein (305aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
methionyl-tRNA formyltransferase
SCN18_25_8_15_R4_B_scaffold_1163_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9287..9805)
DNA (519bp) protein (173aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
def; peptide deformylase Def (EC:3.5.1.88)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D54A31
SCN18_25_8_15_R4_B_scaffold_1163_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9802..11322)
DNA (1521bp) protein (507aa)
DNA recombination protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NX71_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:GAK33639.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
rmuC; DNA recombination protein
SCN18_25_8_15_R4_B_scaffold_1163_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11703..12059)
DNA (357bp) protein (119aa)
SCN18_25_8_15_R4_B_scaffold_1163_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12275..12850)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Burkholderia phenoliruptrix BR3459a RepID=K0DK91_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFT86486.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
SCN18_25_8_15_R4_B_scaffold_1163_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12874..13575)
DNA (702bp) protein (234aa)
Recombination protein RecR n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFL2_9RHOB
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
recR; recombination protein RecR
SCN18_25_8_15_R4_B_scaffold_1163_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13666..13992)
DNA (327bp) protein (109aa)
Nucleoid-associated protein HMPREF0731_1634 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKM4_9PROT
Nucleoid-associated protein HMPREF0731_1634 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_1163_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13989..14357)
DNA (369bp) protein (123aa)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:ACB79975.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACB79975.1};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
DNA polymerase III subunit gamma/tau n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000347940A
DNA polymerase III subunits gamma and tau
Displaying 17 items

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