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SCN18_26_2_15_R1_B_scaffold_1440

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_1440_1
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..476
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C9668
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIM94636.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
SCN18_26_2_15_R1_B_scaffold_1440_2
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

594..1559
DNA (966bp) protein (322aa)
Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580};; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000305D5FD
SCN18_26_2_15_R1_B_scaffold_1440_3
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1907..2872
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003652A2A
Fis family transcriptional regulator
Transcriptional regulator, Fis family {ECO:0000313|EMBL:AEH90426.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_26_2_15_R1_B_scaffold_1440_4
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3025..4542
DNA (1518bp) protein (506aa)
aldehyde dehydrogenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003624B1C
Aldehyde dehydrogenase {ECO:0000313|EMBL:EMG55474.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
aldehyde dehydrogenase
SCN18_26_2_15_R1_B_scaffold_1440_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4613..4969
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003725141
Uncharacterized protein {ECO:0000313|EMBL:EZQ14263.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1440_6
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5180..7342)
DNA (2163bp) protein (721aa)
TonB-dependent receptor n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L333_METC4
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACK86241.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCN18_26_2_15_R1_B_scaffold_1440_7
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7562..8611
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003788975
Periplasmic binding protein {ECO:0000313|EMBL:EPE99972.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
periplasmic binding protein
SCN18_26_2_15_R1_B_scaffold_1440_8
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8622..9677
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000382F143
iron ABC transporter permease
Putative ABC transporter, permease putative iron transporter {ECO:0000313|EMBL:CAX26442.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCN18_26_2_15_R1_B_scaffold_1440_9
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9677..10450
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363ABE7
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACB82407.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCN18_26_2_15_R1_B_scaffold_1440_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10571..10723)
DNA (153bp) protein (51aa)
UPI0003CE0C6B related cluster n=1 Tax=unknown RepID=UPI0003CE0C6B
Endonuclease DDE {ECO:0000313|EMBL:ESZ67711.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
insertion sequence transposase protein
SCN18_26_2_15_R1_B_scaffold_1440_11
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10842..11351)
DNA (510bp) protein (170aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2J0Y8_9RHIZ
Helix-turn-helix domain protein {ECO:0000313|EMBL:EUB96507.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1440_12
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11809..11988
DNA (180bp) protein (60aa)
Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LM38_DINSH
cas3; CRISPR-associated protein Cas3
Cas3: CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:ABV94947.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCN18_26_2_15_R1_B_scaffold_1440_13
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11955..13295)
DNA (1341bp) protein (447aa)
Protein DddP (Metallopeptidase, family M24), DMSP degrading n=1 Tax=Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107) RepID=I7DR70_PHAIB
dddP; protein DddP (metallopeptidase, family M24), DMSP degrading
Protein DddP (Metallopeptidase, family M24), DMSP degrading {ECO:0000313|EMBL:AFO91571.1}; TaxID=391619 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 /; NBRC 16654 / BS107).;"
SCN18_26_2_15_R1_B_scaffold_1440_14
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13510..14904)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
histidine kinase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034CC30F
integral membrane sensor signal transduction histidine kinase
SCN18_26_2_15_R1_B_scaffold_1440_15
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14901..15566)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003658DF2
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51008.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
two component response regulator
SCN18_26_2_15_R1_B_scaffold_1440_16
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15691..16218
DNA (528bp) protein (176aa)
UPI0003CEF033 related cluster n=1 Tax=unknown RepID=UPI0003CEF033
Uncharacterized protein {ECO:0000313|EMBL:ESY62457.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1440_17
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16370..17632
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H171_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig166, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51293.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
major facilitator superfamily (MFS) transporter
SCN18_26_2_15_R1_B_scaffold_1440_18
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(17701..18948)
DNA (1248bp) protein (416aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULK9_SINMW
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ABR64539.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCN18_26_2_15_R1_B_scaffold_1440_19
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18988..19770)
DNA (783bp) protein (261aa)
short-chain dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI000369EE78
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABR64537.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCN18_26_2_15_R1_B_scaffold_1440_20
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19833..20723)
DNA (891bp) protein (297aa)
gluconolactonase n=1 Tax=Rhizobium meliloti RepID=UPI00031EB11B
gluconolactonase/regucalcin
Gluconolactonase/regucalcin {ECO:0000313|EMBL:CDH82720.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCN18_26_2_15_R1_B_scaffold_1440_21
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20835..21551
DNA (717bp) protein (239aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI000362200A
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEH82799.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCN18_26_2_15_R1_B_scaffold_1440_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21555..22691
DNA (1137bp) protein (379aa)
dehydratase n=1 Tax=Sinorhizobium medicae RepID=UPI000377AD61
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ABR64532.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCN18_26_2_15_R1_B_scaffold_1440_23
unknown

Not on your lists

22688..22786
DNA (99bp) protein (33aa)
dehydratase n=1 Tax=Rhizobium meliloti RepID=UPI00037E1E98
Putative dehydratase/enolase
SCN18_26_2_15_R1_B_scaffold_1440_24
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22934..23908
DNA (975bp) protein (325aa)
ABC transporter, periplasmic solute-binding protein n=2 Tax=Rhizobium meliloti RepID=F7XDA2_SINMM
ABC transporter substrate-binding protein
ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:AEH82796.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCN18_26_2_15_R1_B_scaffold_1440_25
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23973..24956
DNA (984bp) protein (328aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV29_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR78065.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component
SCN18_26_2_15_R1_B_scaffold_1440_26
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24953..25684
DNA (732bp) protein (244aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:EYR78064.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR78064.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribose import ATP-binding protein RbsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF32_9RHIZ
ABC transporter-like protein
SCN18_26_2_15_R1_B_scaffold_1440_27
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25693..26448
DNA (756bp) protein (252aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=3 Tax=Rhizobium meliloti RepID=F6EC49_SINMK
3-ketoacyl-ACP reductase
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EHK79941.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCN18_26_2_15_R1_B_scaffold_1440_28
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26448..27338
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIX1_9RHIZ
Galactose mutarotase {ECO:0000313|EMBL:EYR78062.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1440_29
unknown

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27464..27523
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 29 items

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