ggKbase home page

SCN18_26_2_15_R1_B_scaffold_723

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_723_1
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..200)
DNA (198bp) protein (66aa)
UPI0003CED0F6 related cluster n=1 Tax=unknown RepID=UPI0003CED0F6
Uncharacterized protein {ECO:0000313|EMBL:CDX34472.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_723_2
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(328..1089)
DNA (762bp) protein (254aa)
Transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDX6_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EHH10049.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator
SCN18_26_2_15_R1_B_scaffold_723_3
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1212..1592
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B53C4
Histidine kinase {ECO:0000313|EMBL:ESY84643.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
CheY-like receiver domain-containing protein
SCN18_26_2_15_R1_B_scaffold_723_4
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1578..2126)
DNA (549bp) protein (183aa)
RNA polymerase sigma factor n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDX8_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
RNA polymerase sigma factor, sigma-70 family
SCN18_26_2_15_R1_B_scaffold_723_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2130..2276)
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMD1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFB08880.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_723_6
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2548..3342
DNA (795bp) protein (265aa)
Chemotaxis protein CheY n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDK9_9RHIZ
Chemotaxis protein CheY {ECO:0000313|EMBL:ESW81104.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
response regulator receiver protein
SCN18_26_2_15_R1_B_scaffold_723_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3365..5434)
DNA (2070bp) protein (690aa)
Trimethylamine dehydrogenase {ECO:0000313|EMBL:CCV14385.1}; EC=1.5.8.2 {ECO:0000313|EMBL:CCV14385.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Trimethylamine dehydrogenase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDF8_9RHIZ
NADH:flavin oxidoreductase/NADH oxidase
SCN18_26_2_15_R1_B_scaffold_723_8
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5630..6787
DNA (1158bp) protein (386aa)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Acetylornithine deacetylase (ArgE) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDH8_9RHIZ
acetylornithine deacetylase (ArgE)
SCN18_26_2_15_R1_B_scaffold_723_9
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6806..7741)
DNA (936bp) protein (312aa)
UPI0003CE7895 related cluster n=1 Tax=unknown RepID=UPI0003CE7895
LysR family transcriptional regulator {ECO:0000313|EMBL:ESY71634.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
LysR family transcriptional regulator
SCN18_26_2_15_R1_B_scaffold_723_10
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7790..9280)
DNA (1491bp) protein (497aa)
PREDICTED: aldehyde dehydrogenase family 2 member B4, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12176
aldehyde dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADV11768.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCN18_26_2_15_R1_B_scaffold_723_11
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9310..9984)
DNA (675bp) protein (225aa)
UPI0003D01626 related cluster n=1 Tax=unknown RepID=UPI0003D01626
Uncharacterized protein {ECO:0000313|EMBL:ESZ28570.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_723_12
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10004..10420)
DNA (417bp) protein (139aa)
UPI0003D02D51 related cluster n=1 Tax=unknown RepID=UPI0003D02D51
Endoribonuclease L-PSP {ECO:0000313|EMBL:CDX46658.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
endoribonuclease L-PSP
SCN18_26_2_15_R1_B_scaffold_723_13
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10459..11730)
DNA (1272bp) protein (424aa)
UPI0003CEA00D related cluster n=1 Tax=unknown RepID=UPI0003CEA00D
FAD dependent oxidoreductase {ECO:0000313|EMBL:CDX30146.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
putative flavoprotein involved in K+ transport
SCN18_26_2_15_R1_B_scaffold_723_14
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11970..12671)
DNA (702bp) protein (234aa)
UPI0003CFED2F related cluster n=1 Tax=unknown RepID=UPI0003CFED2F
Amino acid ABC transporter ATPase {ECO:0000313|EMBL:ESZ28573.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCN18_26_2_15_R1_B_scaffold_723_15
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12664..13449)
DNA (786bp) protein (262aa)
UPI0003D050D9 related cluster n=1 Tax=unknown RepID=UPI0003D050D9
ABC transporter {ECO:0000313|EMBL:ESZ28574.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCN18_26_2_15_R1_B_scaffold_723_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13446..14621)
DNA (1176bp) protein (392aa)
UPI0003D005AC related cluster n=1 Tax=unknown RepID=UPI0003D005AC
ABC transporter permease {ECO:0000313|EMBL:ESZ28575.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
inner-membrane translocator
SCN18_26_2_15_R1_B_scaffold_723_17
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14622..15581)
DNA (960bp) protein (320aa)
UPI0003CFA2DE related cluster n=1 Tax=unknown RepID=UPI0003CFA2DE
ABC transporter permease {ECO:0000313|EMBL:ESZ28576.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
inner-membrane translocator
SCN18_26_2_15_R1_B_scaffold_723_18
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15719..16849
DNA (1131bp) protein (377aa)
UPI0003CFFC12 related cluster n=1 Tax=unknown RepID=UPI0003CFFC12
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:ESZ28577.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
extracellular ligand-binding receptor
SCN18_26_2_15_R1_B_scaffold_723_19
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16951..18042
DNA (1092bp) protein (364aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
PREDICTED: sulfate/thiosulfate import ATP-binding protein cysA-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C11B80
potA; spermidine/putrescine ABC transporter ATP-binding protein
SCN18_26_2_15_R1_B_scaffold_723_20
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18039..18938
DNA (900bp) protein (300aa)
UPI0003CFD026 related cluster n=1 Tax=unknown RepID=UPI0003CFD026
ABC transporter permease {ECO:0000313|EMBL:ESZ28579.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potB; spermidine/putrescine ABC transporter permease PotB
SCN18_26_2_15_R1_B_scaffold_723_21
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18935..19723
DNA (789bp) protein (263aa)
PREDICTED: probable sulfate transport system permease protein cysT-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C172D1
ABC transporter permease {ECO:0000313|EMBL:ESZ28580.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potC; spermidine/putrescine ABC transporter permease PotC
SCN18_26_2_15_R1_B_scaffold_723_22
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19825..20862
DNA (1038bp) protein (346aa)
UPI0003CFEF89 related cluster n=1 Tax=unknown RepID=UPI0003CFEF89
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potD; spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein
SCN18_26_2_15_R1_B_scaffold_723_23
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20915..22531
DNA (1617bp) protein (539aa)
Choline dehydrogenase, a flavoprotein {ECO:0000313|EMBL:CCV14393.1}; EC=1.1.99.1 {ECO:0000313|EMBL:CCV14393.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Choline dehydrogenase, a flavoprotein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE24_9RHIZ
glucose-methanol-choline oxidoreductase
SCN18_26_2_15_R1_B_scaffold_723_24
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

Not on your lists

22631..23812
DNA (1182bp) protein (394aa)
Major facilitator superfamily transport protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XX29_PARAH
major facilitator superfamily transport protein
Major facilitator superfamily transport protein {ECO:0000313|EMBL:AGT09872.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCN18_26_2_15_R1_B_scaffold_723_25
unknown

Not on your lists

comp(23927..24133)
DNA (207bp) protein (69aa)

This feature has no annotations

SCN18_26_2_15_R1_B_scaffold_723_26
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24299..25300)
DNA (1002bp) protein (334aa)
polyphosphate kinase n=1 Tax=Methylocystis parvus RepID=UPI0002F13267
polyphosphate kinase 2
Polyphosphate kinase 2 {ECO:0000313|EMBL:CCJ08954.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_26_2_15_R1_B_scaffold_723_27
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25357..25605)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Ochrobactrum anthropi RepID=UPI00028A08B0
Uncharacterized protein {ECO:0000313|EMBL:EXL09673.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_723_28
SCNPILOT_CONT_750_P_Mesorhizobium_63_10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25799..26851
DNA (1053bp) protein (351aa)
Phosphate ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGC5_9RHIZ
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
high-affinity phosphate transport protein, ABC superfamily, peri_bind
SCN18_26_2_15_R1_B_scaffold_723_29
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26923..27912
DNA (990bp) protein (330aa)
UPI0003CF5188 related cluster n=1 Tax=unknown RepID=UPI0003CF5188
Phosphate transporter permease subunit PstC {ECO:0000313|EMBL:ESW81092.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
phosphate ABC transporter permease
SCN18_26_2_15_R1_B_scaffold_723_30
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27916..28755
DNA (840bp) protein (280aa)
UPI0003CF7F0D related cluster n=1 Tax=unknown RepID=UPI0003CF7F0D
Phosphate transporter permease subunit PtsA {ECO:0000313|EMBL:ESY70261.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
phosphate ABC transporter permease
Displaying items 1-30 of 49 in total

View Taxonomy