ggKbase home page

SCN18_26_2_15_R1_B_scaffold_1598

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_1598_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..612)
DNA (612bp) protein (204aa)
ldc; lysine (EC:4.1.1.17 4.1.1.18)
Lysine {ECO:0000313|EMBL:ACI98761.1}; EC=4.1.1.17 {ECO:0000313|EMBL:ACI98761.1};; EC=4.1.1.18 {ECO:0000313|EMBL:ACI98761.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Lysine n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMU5_RHOCS
SCN18_26_2_15_R1_B_scaffold_1598_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

717..845
DNA (129bp) protein (43aa)
SCN18_26_2_15_R1_B_scaffold_1598_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(914..2254)
DNA (1341bp) protein (447aa)
MATE efflux family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKQ5_MESCW
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADV14969.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCN18_26_2_15_R1_B_scaffold_1598_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2552..3043)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003768043
Conserved protein {ECO:0000313|EMBL:GAK45133.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1598_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3030..4703)
DNA (1674bp) protein (558aa)
Sulfite reductase (Ferredoxin) {ECO:0000313|EMBL:ABS62512.1}; EC=1.8.7.1 {ECO:0000313|EMBL:ABS62512.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Sulfite reductase (Ferredoxin) n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH9_PARL1
sulfite reductase
SCN18_26_2_15_R1_B_scaffold_1598_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4690..5052)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DIZ0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EJW22048.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1598_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5342..5938
DNA (597bp) protein (199aa)
Tetracycline repressor protein class H n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3CB95_STRMB
Tetracycline repressor protein class H {ECO:0000313|EMBL:EMF01317.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
TetR family transcriptional regulator
SCN18_26_2_15_R1_B_scaffold_1598_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5945..6730)
DNA (786bp) protein (262aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI1_PARL1
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS62514.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_26_2_15_R1_B_scaffold_1598_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6727..7476)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036C6EB9
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACE99030.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_26_2_15_R1_B_scaffold_1598_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7528..7821)
DNA (294bp) protein (98aa)
GIY-YIG nuclease n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039F0BC5
Excinuclease ABC C subunit domain-containing protein {ECO:0000313|EMBL:KJJ85124.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
putative excinuclease ABC, C subunit
SCN18_26_2_15_R1_B_scaffold_1598_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7867..8868)
DNA (1002bp) protein (334aa)
NMT1/THI5 like domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI3_PARL1
NMT1/THI5-like domain-containing protein {ECO:0000313|EMBL:GAK45139.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NMT1/THI5-like domain-containing protein
SCN18_26_2_15_R1_B_scaffold_1598_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9000..9461
DNA (462bp) protein (154aa)
chemotaxis protein CheY n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039AC7F9
sensory box protein
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCN18_26_2_15_R1_B_scaffold_1598_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9574..10143)
DNA (570bp) protein (190aa)
Hypothetical membrane protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K5U7_AZOSB
Uncharacterized protein {ECO:0000313|EMBL:KFB77465.1}; Flags: Precursor;; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1598_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10205..10711)
DNA (507bp) protein (169aa)
SCN18_26_2_15_R1_B_scaffold_1598_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10774..11304)
DNA (531bp) protein (177aa)
Integral membrane protein-like protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI4_PARL1
integral membrane protein
Integral membrane protein-like protein {ECO:0000313|EMBL:ABS62517.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_26_2_15_R1_B_scaffold_1598_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11301..11867)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI5_PARL1
Conserved protein {ECO:0000313|EMBL:GAK45093.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1598_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11932..14073)
DNA (2142bp) protein (714aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ACA21023.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ACA21023.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
penicillin-binding protein 1A n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003791A5F
1A family penicillin-binding protein
SCN18_26_2_15_R1_B_scaffold_1598_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14581..14943
DNA (363bp) protein (121aa)
SCN18_26_2_15_R1_B_scaffold_1598_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14900..16147
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRJ2_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62525.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_26_2_15_R1_B_scaffold_1598_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16151..17335
DNA (1185bp) protein (395aa)
Phage portal protein, HK97 family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5F7_9BRAD
Phage portal protein, HK97 family {ECO:0000313|EMBL:EFI51554.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
phage portal protein, HK97 family
SCN18_26_2_15_R1_B_scaffold_1598_21
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17332..17604
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0E5E6_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:KCZ95748.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas hirschiana VP5.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1598_22
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17601..18143
DNA (543bp) protein (181aa)
Phage prohead protease, HK97 family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JVN5_HYPDA
phage prohead protease HK97 family
Phage prohead protease, HK97 family {ECO:0000313|EMBL:ADJ22924.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_26_2_15_R1_B_scaffold_1598_23
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18161..19417
DNA (1257bp) protein (419aa)
Phage major capsid protein, HK97 family n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B785_9RHIZ
phage major capsid protein, HK97 family
Phage major capsid protein, HK97 family {ECO:0000313|EMBL:AGK58097.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_26_2_15_R1_B_scaffold_1598_24
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19580..20128
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039F9D27
gene Transfer Agent (GTA) ORFG06
Gene Transfer Agent (GTA) ORFG06 {ECO:0000313|EMBL:BAQ18001.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Displaying 24 items

View Taxonomy