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SCN18_26_2_15_R2_B_scaffold_2072

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_2072_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..160
DNA (159bp) protein (53aa)
msbA; lipid A export ATP-binding/permease MsbA (EC:3.6.3.-)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:CCB67033.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCB67033.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN0_HYPSM
SCN18_26_2_15_R2_B_scaffold_2072_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(197..937)
DNA (741bp) protein (247aa)
Protein tyrosine/serine phosphatase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN1_HYPSM
protein tyrosine/serine phosphatase
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:CCB67034.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1145..3148
DNA (2004bp) protein (668aa)
Three-deoxy-D-manno-octulosonic-acid transferase domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN3_HYPSM
3-deoxy-D-manno-octulosonic-acid transferase
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:CCB67036.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3152..4177
DNA (1026bp) protein (342aa)
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Tetraacyldisaccharide 4'-kinase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN4_HYPSM
SCN18_26_2_15_R2_B_scaffold_2072_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4174..4419)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN5_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67038.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4528..6075)
DNA (1548bp) protein (516aa)
xseA; exonuclease VII, large subunit OB-fold nucleic acid binding domain (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN6_HYPSM
SCN18_26_2_15_R2_B_scaffold_2072_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6087..7364
DNA (1278bp) protein (426aa)
purD; phosphoribosylamine-glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CCB67040.1};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN7_HYPSM
SCN18_26_2_15_R2_B_scaffold_2072_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7407..8399
DNA (993bp) protein (331aa)
Patatin n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5D2_HYPSM
patatin
Patatin {ECO:0000313|EMBL:CCB67041.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8563..9024)
DNA (462bp) protein (154aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972, ECO:0000313|EMBL:CCB67042.1}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
tRNA-specific adenosine deaminase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5D3_HYPSM
tadA; tRNA-specific adenosine deaminase
SCN18_26_2_15_R2_B_scaffold_2072_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9129..9923
DNA (795bp) protein (265aa)
RNA pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887, ECO:0000313|EMBL:CCB67043.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Pseudouridine synthase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5D4_HYPSM
SCN18_26_2_15_R2_B_scaffold_2072_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9923..10489
DNA (567bp) protein (189aa)
Putative methyltransferase with SAM-dependent methyltransferase domain n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5D5_HYPSM
yhhF; methyltransferase with SAM-dependent methyltransferase domain
Putative methyltransferase with SAM-dependent methyltransferase domain {ECO:0000313|EMBL:CCB67044.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10507..11103)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5D6_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67045.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11177..12460)
DNA (1284bp) protein (428aa)
Glucose/galactose transporter n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5D8_HYPSM
glucose/galactose transporter
Glucose/galactose transporter {ECO:0000313|EMBL:CCB67047.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12724..13059
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5E0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67049.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2072_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13203..13406
DNA (204bp) protein (68aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Bacterioferritin n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B614_9RHIZ
bacterioferritin
Displaying 15 items

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