ggKbase home page

SCN18_26_2_15_R2_B_scaffold_3044

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_3044_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1061
DNA (1059bp) protein (353aa)
Peptidase M23 n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BIS6_9RHIZ
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AGK60020.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_26_2_15_R2_B_scaffold_3044_2
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1256..2089
DNA (834bp) protein (278aa)
Alpha/beta hydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILZ7_KORVE
alpha/beta hydrolase
Alpha/beta hydrolase {ECO:0000313|EMBL:ABF42103.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCN18_26_2_15_R2_B_scaffold_3044_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2333..2563
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAK9_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK60018.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_26_2_15_R2_B_scaffold_3044_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2619..3044)
DNA (426bp) protein (142aa)
Cytochrome c class I n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JH86_HYPSM
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:CCB68135.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3044_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3294..4238
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9K7_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63695.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3044_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4243..4620
DNA (378bp) protein (126aa)
Cytochrome c2 (Modular protein) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9K8_HYPSM
cytochrome c2
Cytochrome c2 {ECO:0000313|EMBL:AGK56971.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_26_2_15_R2_B_scaffold_3044_7
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4675..5217
DNA (543bp) protein (181aa)
RNA polymerase sigma factor n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9K9_HYPSM
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716, ECO:0000313|EMBL:CCB63697.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3044_8
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5214..6023
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9L0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63698.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3044_9
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6067..7029)
DNA (963bp) protein (321aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EFQ4_9SPHN
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EHJ59832.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCN18_26_2_15_R2_B_scaffold_3044_10
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7179..8111
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDV1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA90476.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_26_2_15_R2_B_scaffold_3044_11
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8159..8974
DNA (816bp) protein (272aa)
Methyltransferase type 11 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GGZ4_9BACT
methylase involved in ubiquinone/menaquinone biosynthesis
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCN18_26_2_15_R2_B_scaffold_3044_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9194..9712
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5I5_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67105.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying 12 items

View Taxonomy