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SCN18_26_2_15_R4_B_scaffold_278

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Displaying items 1-30 of 285 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R4_B_scaffold_278_1
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1746
DNA (1746bp) protein (582aa)
Outer membrane protein (Fragment) n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U629_STEMA
Uncharacterized protein {ECO:0000313|EMBL:AKC81508.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_278_2
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1930..3849
DNA (1920bp) protein (640aa)
Protease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPJ2_9GAMM
Protease {ECO:0000313|EMBL:EIL89133.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_278_3
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3971..4951
DNA (981bp) protein (327aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC6_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL99567.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
SCN18_26_2_15_R4_B_scaffold_278_4
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5226..5645
DNA (420bp) protein (140aa)
Rubrerythrin n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P8_9GAMM
Rubrerythrin {ECO:0000313|EMBL:EIL95489.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
rubrerythrin
SCN18_26_2_15_R4_B_scaffold_278_5
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5684..7069
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95490.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Fe-S oxidoreductase
SCN18_26_2_15_R4_B_scaffold_278_6
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7072..7653
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF0_9GAMM
Protein of unknown function (DUF3501)
Uncharacterized protein {ECO:0000313|EMBL:EIL99570.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCN18_26_2_15_R4_B_scaffold_278_7
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7654..8286
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AC919
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX12160.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCN18_26_2_15_R4_B_scaffold_278_8
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8527..9045)
DNA (519bp) protein (173aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Adenine phosphoribosyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXZ2_9GAMM
adenine phosphoribosyltransferase
SCN18_26_2_15_R4_B_scaffold_278_9
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9121..9405)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJD1_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCN18_26_2_15_R4_B_scaffold_278_10
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9539..10594
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000370EDCD
Uncharacterized protein {ECO:0000313|EMBL:KGI78451.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
adrA; diguanylate cyclase/phosphodiesterase domain-containing protein
SCN18_26_2_15_R4_B_scaffold_278_11
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10753..12513
DNA (1761bp) protein (587aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC5_9GAMM
SCN18_26_2_15_R4_B_scaffold_278_12
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..13080
DNA (561bp) protein (187aa)
nucleoside deaminase n=1 Tax=Dyella japonica RepID=UPI000300B85E
nucleoside deaminase
Nucleoside deaminase {ECO:0000313|EMBL:AHX14496.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCN18_26_2_15_R4_B_scaffold_278_13
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13077..13799
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXZ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92087.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_278_14
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13876..14868
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030A5C27
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF47367.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCN18_26_2_15_R4_B_scaffold_278_trna_2
unknown

Not on your lists

comp(14974..15046)
DNA (73bp)
transferRNA Lys
SCN18_26_2_15_R4_B_scaffold_278_15
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15107..15802)
DNA (696bp) protein (232aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F73489
7-cyano-7-deazaguanine synthase
SCN18_26_2_15_R4_B_scaffold_278_16
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15932..16621)
DNA (690bp) protein (230aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WD00_9GAMM
organic radical activating enzyme
SCN18_26_2_15_R4_B_scaffold_278_17
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16632..17465)
DNA (834bp) protein (278aa)
Tol-pal system protein YbgF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU4_9GAMM
Tol-pal system protein YbgF {ECO:0000313|EMBL:EIL98685.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tol-pal system protein YbgF
SCN18_26_2_15_R4_B_scaffold_278_18
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17508..18017)
DNA (510bp) protein (170aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY06_9GAMM
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EIL92097.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
membrane protein
SCN18_26_2_15_R4_B_scaffold_278_19
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18272..19594)
DNA (1323bp) protein (441aa)
Protein TolB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY07_9GAMM
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
tol-pal system beta propeller repeat protein TolB
SCN18_26_2_15_R4_B_scaffold_278_20
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19599..20546)
DNA (948bp) protein (316aa)
F0F1-type ATP synthase, beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NJA7_9GAMM
F0F1-type ATP synthase, beta subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCN18_26_2_15_R4_B_scaffold_278_21
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20533..20994)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FC9185
biopolymer transporter TolR
Biopolymer transporter TolR {ECO:0000313|EMBL:AIF47051.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCN18_26_2_15_R4_B_scaffold_278_22
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21008..21691)
DNA (684bp) protein (228aa)
Cell division and transport-associated protein TolQ n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH1_9GAMM
Cell division and transport-associated protein TolQ
Cell division and transport-associated protein TolQ {ECO:0000313|EMBL:AGG87884.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_26_2_15_R4_B_scaffold_278_23
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21723..22133)
DNA (411bp) protein (137aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH2_9GAMM
tol-pal system-associated acyl-CoA thioesterase
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:AGG87883.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_26_2_15_R4_B_scaffold_278_24
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22126..23175)
DNA (1050bp) protein (350aa)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH3_9GAMM
Holliday junction DNA helicase subunit RuvB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCN18_26_2_15_R4_B_scaffold_278_25
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23287..25182)
DNA (1896bp) protein (632aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9Z0_9GAMM
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
trkD; potassium transport protein Kup
SCN18_26_2_15_R4_B_scaffold_278_26
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25209..27146)
DNA (1938bp) protein (646aa)
potassium transporter Kup n=1 Tax=Dyella ginsengisoli RepID=UPI000345891A
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
trkD; potassium transport protein Kup
SCN18_26_2_15_R4_B_scaffold_278_27
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27147..27740)
DNA (594bp) protein (198aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Holliday junction DNA helicase RuvA n=1 Tax=Dyella ginsengisoli RepID=UPI00034834EC
ATP-dependent DNA helicase RuvA
SCN18_26_2_15_R4_B_scaffold_278_28
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27737..28294)
DNA (558bp) protein (186aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY15_9GAMM
SCN18_26_2_15_R4_B_scaffold_278_29
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28404..29117)
DNA (714bp) protein (238aa)
Probable transcriptional regulatory protein UU5_06904 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK7_9GAMM
Probable transcriptional regulatory protein UU5_06904 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulatory protein
Displaying items 1-30 of 285 in total

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