ggKbase home page

SCN18_26_2_15_R4_B_scaffold_695

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R4_B_scaffold_695_1
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
SCN18_26_2_15_R4_B_scaffold_695_2
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111..599)
DNA (489bp) protein (163aa)
Transposase, TnpA family n=1 Tax=Rhodanobacter denitrificans RepID=M4NGM8_9GAMM
transposase, TnpA family
Transposase, TnpA family {ECO:0000313|EMBL:AGG88813.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_26_2_15_R4_B_scaffold_695_3
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1267..1491
DNA (225bp) protein (75aa)
Helix-turn-helix type 3 domain protein n=1 Tax=mine drainage metagenome RepID=T1BF48_9ZZZZ
Helix-turn-helix type 3 domain protein {ECO:0000313|EMBL:EQD67168.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA-binding protein
SCN18_26_2_15_R4_B_scaffold_695_4
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1504..2247
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000361A610
SseB protein
SseB protein {ECO:0000313|EMBL:AGG88783.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_26_2_15_R4_B_scaffold_695_5
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2614..4887
DNA (2274bp) protein (758aa)
Type I secretion system ABC transporter, HlyB family n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C294_9XANT
Type I secretion system ABC transporter, HlyB family {ECO:0000313|EMBL:EGD20359.1}; Flags: Precursor;; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas gardneri ATCC 19865.;"
ABC transporter permease/ATP-binding protein
SCN18_26_2_15_R4_B_scaffold_695_6
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4892..6313
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003499F1A
Hemolysin secretion protein D {ECO:0000313|EMBL:KJV33806.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
membrane-fusion protein
SCN18_26_2_15_R4_B_scaffold_695_7
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6326..7138
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2Q9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93750.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCN18_26_2_15_R4_B_scaffold_695_8
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7197..15524
DNA (8328bp) protein (2776aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037AC6AF
HlyJ hemolysin-like protein {ECO:0000313|EMBL:EIL87645.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
HlyJ hemolysin-like protein
SCN18_26_2_15_R4_B_scaffold_695_9
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15688..17346
DNA (1659bp) protein (553aa)
Alpha-glucosidase {ECO:0000313|EMBL:ABF39392.1}; EC=3.2.1.20 {ECO:0000313|EMBL:ABF39392.1};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Alpha-glucosidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUQ8_KORVE
Alpha-glucosidase
SCN18_26_2_15_R4_B_scaffold_695_10
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17783..17959
DNA (177bp) protein (59aa)
SCN18_26_2_15_R4_B_scaffold_695_11
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18227..18736
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH23_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98764.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_695_12
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18853..22083)
DNA (3231bp) protein (1077aa)
Heavy metal efflux pump, CzcA family n=2 Tax=Ralstonia RepID=C6BQJ4_RALP1
Cation transporter {ECO:0000313|EMBL:EPX94529.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
heavy metal efflux pump, CzcA family
SCN18_26_2_15_R4_B_scaffold_695_13
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22080..23234)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Ralstonia solanacearum RepID=UPI0003088135
Uncharacterized protein {ECO:0000313|EMBL:EPX94530.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
heavy metal resistance protein
SCN18_26_2_15_R4_B_scaffold_695_14
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23236..24435)
DNA (1200bp) protein (400aa)
Outer membrane efflux protein n=3 Tax=Ralstonia RepID=C6BQL8_RALP1
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ACS66376.1}; Flags: Precursor;; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCN18_26_2_15_R4_B_scaffold_695_15
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24518..25099)
DNA (582bp) protein (194aa)
RNA polymerase sigma factor n=1 Tax=Ralstonia syzygii R24 RepID=G3A191_9RALS
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=907261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia syzygii R24.;"
RNA polymerase sigma factor
SCN18_26_2_15_R4_B_scaffold_695_16
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25096..25539)
DNA (444bp) protein (148aa)
NAD+ synthetase n=1 Tax=Ralstonia solanacearum RepID=UPI0002FC073B
NAD+ synthetase
NAD+ synthetase {ECO:0000313|EMBL:AJW47593.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
SCN18_26_2_15_R4_B_scaffold_695_17
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25536..25829)
DNA (294bp) protein (98aa)
SCN18_26_2_15_R4_B_scaffold_695_18
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25972..26250
DNA (279bp) protein (93aa)
hypothetical protein id=12495453 bin=THIO_HI species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ENO82003.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_695_19
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26326..27663
DNA (1338bp) protein (446aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFP4_9GAMM
arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:AGG88877.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_26_2_15_R4_B_scaffold_695_20
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27699..28730)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIF7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99248.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_695_21
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28868..30475)
DNA (1608bp) protein (536aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WR32_9GAMM
Glycosyl transferase family protein {ECO:0000313|EMBL:EIM01924.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
SCN18_26_2_15_R4_B_scaffold_695_22
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30472..31497)
DNA (1026bp) protein (342aa)
ADP-heptose:LPS heptosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHN4_9GAMM
ADP-heptose:LPS heptosyltransferase
ADP-heptose:LPS heptosyltransferase {ECO:0000313|EMBL:AGG89168.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_26_2_15_R4_B_scaffold_695_23
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31737..33644)
DNA (1908bp) protein (636aa)
asparagine synthetase (EC:6.3.5.4)
Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=mine drainage metagenome RepID=T1AEH0_9ZZZZ
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EQD59021.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCN18_26_2_15_R4_B_scaffold_695_24
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33667..35229)
DNA (1563bp) protein (521aa)
Glycosyl transferase family 39 {ECO:0000313|EMBL:EQD58187.1}; EC=2.-.-.- {ECO:0000313|EMBL:EQD58187.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glycosyl transferase family 39 n=1 Tax=mine drainage metagenome RepID=T1ALE6_9ZZZZ
glycosyltransferase
SCN18_26_2_15_R4_B_scaffold_695_25
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35247..35528)
DNA (282bp) protein (94aa)
Putative conserved protein, lipid A biosynthesis n=1 Tax=mine drainage metagenome RepID=T1C168_9ZZZZ
Putative conserved protein, lipid A biosynthesis {ECO:0000313|EMBL:EQD59019.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
lipid A biosynthesis-like
SCN18_26_2_15_R4_B_scaffold_695_26
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35522..35836)
DNA (315bp) protein (105aa)
Lipid A biosynthesis domain-containing protein n=1 Tax=mine drainage metagenome RepID=T1AR34_9ZZZZ
Lipid A biosynthesis domain-containing protein {ECO:0000313|EMBL:EQD59018.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Lipid A biosynthesis, N-terminal
SCN18_26_2_15_R4_B_scaffold_695_27
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35833..36636)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034745D8
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCN18_26_2_15_R4_B_scaffold_695_28
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36649..37308)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B5BBA
TPR repeats containing protein {ECO:0000313|EMBL:EKF73843.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
hypothetical protein
SCN18_26_2_15_R4_B_scaffold_695_29
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37311..37997)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037D3D70
long-chain fatty acid--CoA ligase
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:AJC47237.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
SCN18_26_2_15_R4_B_scaffold_695_30
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37966..39456)
DNA (1491bp) protein (497aa)
Long-chain-fatty-acid--CoA ligase FadD15 {ECO:0000313|EMBL:GAO33488.1}; EC=6.2.1.3 {ECO:0000313|EMBL:GAO33488.1};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4F36
AMP-dependent synthetase and ligase
Displaying items 1-30 of 38 in total

View Taxonomy