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SCN18_30_10_14_R1_B_scaffold_2187

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2187_1
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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comp(2..1054)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI00031EFF9E
Uncharacterized protein {ECO:0000313|EMBL:EZP72394.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2187_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1616..2419
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FB3
Uncharacterized protein {ECO:0000313|EMBL:GAL99308.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCN18_30_10_14_R1_B_scaffold_2187_3
unknown

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2467..2802
DNA (336bp) protein (112aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2187_4
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2766..3374
DNA (609bp) protein (203aa)
Exonuclease, RNase T and DNA polymerase III n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZ69_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KKC25007.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
exonuclease
SCN18_30_10_14_R1_B_scaffold_2187_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3737..4243
DNA (507bp) protein (169aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDI4_9SPHN
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2187_6
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4407..5387
DNA (981bp) protein (327aa)
Membrane fusion protein MtrC n=1 Tax=Sphingomonas sp. LH128 RepID=J8VX31_9SPHN
Membrane fusion protein MtrC {ECO:0000313|EMBL:EJU12603.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
membrane fusion protein MtrC
SCN18_30_10_14_R1_B_scaffold_2187_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5387..8443
DNA (3057bp) protein (1019aa)
Acriflavin resistance protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SIF0_9SPHN
Acriflavin resistance protein {ECO:0000313|EMBL:EJU12604.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
acriflavin resistance protein
SCN18_30_10_14_R1_B_scaffold_2187_8
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8440..9810
DNA (1371bp) protein (457aa)
Outer membrane efflux protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPR3_9SPHN
Outer membrane efflux protein {ECO:0000313|EMBL:EJU12605.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
Outer membrane efflux protein
SCN18_30_10_14_R1_B_scaffold_2187_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9820..10497
DNA (678bp) protein (226aa)
UPI0003D60B1D related cluster n=1 Tax=unknown RepID=UPI0003D60B1D
XRE family transcriptional regulator {ECO:0000313|EMBL:ETI65305.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
response regulator
SCN18_30_10_14_R1_B_scaffold_2187_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10494..11864
DNA (1371bp) protein (457aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Sensory transduction histidine kinase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIG4_9SPHN
sensory transduction histidine kinase
SCN18_30_10_14_R1_B_scaffold_2187_11
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11913..12593)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D34A37
Acid phosphatase {ECO:0000313|EMBL:KFD27669.1}; PAP2 superfamily protein {ECO:0000313|EMBL:KEZ13039.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
PA-phosphatase-like phosphoesterase
SCN18_30_10_14_R1_B_scaffold_2187_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12749..13039
DNA (291bp) protein (97aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDI2_9SPHN
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:EHJ60610.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
peptidase M4
SCN18_30_10_14_R1_B_scaffold_2187_13
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13049..13723
DNA (675bp) protein (225aa)
Two-component system, OmpR family, response regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IM78_9SPHN
two-component system OmpR family response regulator
Two-component system, OmpR family, response regulator {ECO:0000313|EMBL:CCA92530.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_30_10_14_R1_B_scaffold_2187_14
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13720..15069
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Sensory transduction histidine kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IM79_9SPHN
sensory transduction histidine kinase
SCN18_30_10_14_R1_B_scaffold_2187_15
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15066..16403
DNA (1338bp) protein (446aa)
Outer membrane efflux protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IM80_9SPHN
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:CCA92532.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_30_10_14_R1_B_scaffold_2187_16
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16400..17428
DNA (1029bp) protein (343aa)
Transporter, putative n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IM81_9SPHN
transporter
Transporter, putative {ECO:0000313|EMBL:CCA92533.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_30_10_14_R1_B_scaffold_2187_17
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17425..20103
DNA (2679bp) protein (893aa)
Acriflavin resistance protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDJ9_9SPHN
Transporter {ECO:0000313|EMBL:KHK93574.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
transporter
Displaying 17 items

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