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SCN18_30_10_14_R1_B_scaffold_2273

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2273_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..296
DNA (294bp) protein (98aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA topoisomerase 4 subunit A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT7_9SPHN
parC; DNA topoisomerase IV subunit A
SCN18_30_10_14_R1_B_scaffold_2273_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

385..2169
DNA (1785bp) protein (595aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64766.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2133..3344)
DNA (1212bp) protein (404aa)
tRNA nucleotidyltransferase {ECO:0000313|EMBL:BAK64765.1}; EC=2.7.7.19 {ECO:0000313|EMBL:BAK64765.1};; EC=2.7.7.72 {ECO:0000313|EMBL:BAK64765.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA nucleotidyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT5_9SPHN
cca; tRNA nucleotidyltransferase
SCN18_30_10_14_R1_B_scaffold_2273_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3341..3967)
DNA (627bp) protein (209aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT4_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK64764.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3964..4533)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64763.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_6
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4722..5108
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PLB9_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SCN18_30_10_14_R1_B_scaffold_2273_7
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5151..5615)
DNA (465bp) protein (155aa)
Putative acetyltransferase {ECO:0000313|EMBL:BAK68543.1}; EC=2.3.1.- {ECO:0000313|EMBL:BAK68543.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative acetyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY8_9SPHN
putative acetyltransferase
SCN18_30_10_14_R1_B_scaffold_2273_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5875..6423)
DNA (549bp) protein (183aa)
Putative acetyltransferase {ECO:0000313|EMBL:BAK64762.1}; EC=2.3.1.- {ECO:0000313|EMBL:BAK64762.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative acetyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT2_9SPHN
putative acetyltransferase
SCN18_30_10_14_R1_B_scaffold_2273_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6525..6917
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64761.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6985..7920)
DNA (936bp) protein (312aa)
DnaJ-class molecular chaperone n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK80_9SPHN
DnaJ-class molecular chaperone
DnaJ-class molecular chaperone {ECO:0000313|EMBL:BAK64943.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8021..8716)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK81_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64944.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8822..9436
DNA (615bp) protein (205aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK82_9SPHN
pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase
SCN18_30_10_14_R1_B_scaffold_2273_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9471..10262
DNA (792bp) protein (264aa)
Phenazine biosynthesis protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK84_9SPHN
phenazine biosynthesis protein
Phenazine biosynthesis protein {ECO:0000313|EMBL:BAK64947.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10276..11244)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUQ8_9SPHN
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
magnesium and cobalt transport protein CorA
SCN18_30_10_14_R1_B_scaffold_2273_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11379..12437
DNA (1059bp) protein (353aa)
GTPase Obg n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIU8_9SPHN
putative GTP-binding protein
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_16
unknown

Not on your lists

12422..12583
DNA (162bp) protein (54aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2273_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12568..13557
DNA (990bp) protein (330aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutamate 5-kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA9_9SPHN
proB; glutamate 5-kinase
SCN18_30_10_14_R1_B_scaffold_2273_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13638..14558
DNA (921bp) protein (307aa)
Putative epimerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJB0_9SPHN
putative epimerase
Putative epimerase {ECO:0000313|EMBL:BAK64780.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14674..14922
DNA (249bp) protein (83aa)
Acyl carrier protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJB2_9SPHN
acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:BAK64782.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2273_20
unknown

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14927..15037
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 20 items

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