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SCN18_30_10_14_R1_B_scaffold_2363

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2363_1
unknown

Not on your lists

3..164
DNA (162bp) protein (54aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2363_2
unknown

Not on your lists

170..262
DNA (93bp) protein (31aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2363_trna_1
unknown

Not on your lists

comp(590..660)
DNA (71bp)
transferRNA Gln
SCN18_30_10_14_R1_B_scaffold_2363_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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908..1981
DNA (1074bp) protein (358aa)
Exopolyphosphatase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKJ7_9SPHN
exopolyphosphatase
Exopolyphosphatase {ECO:0000313|EMBL:BAK65060.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1981..2646
DNA (666bp) protein (222aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKJ8_9SPHN
rlmE; ribosomal RNA large subunit methyltransferase E
SCN18_30_10_14_R1_B_scaffold_2363_5
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2778..4073
DNA (1296bp) protein (432aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TGH7_BURPP
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACD20149.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCN18_30_10_14_R1_B_scaffold_2363_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4113..4307)
DNA (195bp) protein (65aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKK0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65063.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4307..4624)
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKK1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65064.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4621..5082)
DNA (462bp) protein (154aa)
DnaJ-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKK2_9SPHN
DnaJ-like protein
DnaJ-like protein {ECO:0000313|EMBL:BAK65065.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5750..6433)
DNA (684bp) protein (228aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:BAK65071.1}; EC=3.5.1.28 {ECO:0000313|EMBL:BAK65071.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKK8_9SPHN
N-acetylmuramoyl-L-alanine amidase
SCN18_30_10_14_R1_B_scaffold_2363_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6541..7401)
DNA (861bp) protein (287aa)
Chemotaxis protein methyltransferase {ECO:0000313|EMBL:BAK65072.1}; EC=2.1.1.80 {ECO:0000313|EMBL:BAK65072.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Chemotaxis protein methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKK9_9SPHN
cheR; chemotaxis protein methyltransferase
SCN18_30_10_14_R1_B_scaffold_2363_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7398..8486)
DNA (1089bp) protein (363aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL0_9SPHN
cheB; chemotaxis response regulator protein-glutamate methylesterase
SCN18_30_10_14_R1_B_scaffold_2363_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8512..8877)
DNA (366bp) protein (122aa)
Chemotaxis protein CheY n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL1_9SPHN
cheY; chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:BAK65074.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8944..9387)
DNA (444bp) protein (148aa)
Chemotaxis signal transduction protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL2_9SPHN
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:BAK65075.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9384..11834)
DNA (2451bp) protein (817aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Chemotaxis protein CheA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL3_9SPHN
cheA; chemotaxis protein CheA
SCN18_30_10_14_R1_B_scaffold_2363_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11923..12591)
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65077.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13020..13646
DNA (627bp) protein (209aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Pseudouridine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL6_9SPHN
rluD; ribosomal large subunit pseudouridine synthase D
SCN18_30_10_14_R1_B_scaffold_2363_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13658..13945
DNA (288bp) protein (96aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Pseudouridine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL6_9SPHN
rluD; ribosomal large subunit pseudouridine synthase D
SCN18_30_10_14_R1_B_scaffold_2363_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14011..14919
DNA (909bp) protein (303aa)
RNA polymerase sigma factor RpoH n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL7_9SPHN
rpoH; RNA polymerase sigma-32 factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15031..15411
DNA (381bp) protein (127aa)
Putative fluoride ion transporter CrcB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM0_9SPHN
protein CrcB-like protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15408..16604
DNA (1197bp) protein (399aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Pseudouridine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM1_9SPHN
pseudouridine synthase
SCN18_30_10_14_R1_B_scaffold_2363_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16676..17596)
DNA (921bp) protein (307aa)
Phosphohydrolase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H3Q2_9SPHN
Putative phosphohydrolase {ECO:0000313|EMBL:EIM68718.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
putative phosphohydrolase
SCN18_30_10_14_R1_B_scaffold_2363_22
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17655..18548
DNA (894bp) protein (298aa)
diacylglycerol kinase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003765B4D
YegS//BmrU family lipid kinase {ECO:0000313|EMBL:KEZ20075.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
putative diacylglycerol kinase
SCN18_30_10_14_R1_B_scaffold_2363_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18702..19712
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJW0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67318.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_24
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19767..20639
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Togninia minima (strain UCR-PA7) RepID=R8BPM6_TOGMI
Uncharacterized protein {ECO:0000313|EMBL:AKH44235.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2363_25
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20866..21537
DNA (672bp) protein (224aa)
Phosphoglycolate phosphatase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPE0_9SPHN
phosphoglycolate phosphatase
Phosphoglycolate phosphatase {ECO:0000313|EMBL:BAK68121.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_26
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21534..21794
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68120.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_27
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21791..22489
DNA (699bp) protein (233aa)
ATP synthase mitochondrial F1 complex assembly factor 2 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD8_9SPHN
ATP synthase mitochondrial F1 complex assembly factor 2
ATP synthase mitochondrial F1 complex assembly factor 2 {ECO:0000313|EMBL:BAK68119.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_28
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22578..23507
DNA (930bp) protein (310aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD7_9SPHN
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAK68118.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2363_29
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23735..25102
DNA (1368bp) protein (456aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
L-aspartate oxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD6_9SPHN
nadB; L-aspartate oxidase
Displaying items 1-30 of 31 in total

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