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SCN18_30_10_14_R1_B_scaffold_2665

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2665_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..750
DNA (750bp) protein (250aa)
ABC transporter permease n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IRF9_9SPHN
ABC transporter permease {ECO:0000313|EMBL:EQB31430.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2665_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(760..1743)
DNA (984bp) protein (328aa)
Putative DNA polymerase III subunit delta {ECO:0000313|EMBL:BAK68439.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAK68439.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative DNA polymerase III subunit delta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR73_9SPHN
holA; putative DNA polymerase III subunit delta
SCN18_30_10_14_R1_B_scaffold_2665_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1751..2233)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR74_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68440.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2233..4713)
DNA (2481bp) protein (827aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Leucine--tRNA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR75_9SPHN
leuS; leucyl-tRNA synthetase
SCN18_30_10_14_R1_B_scaffold_2665_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4763..5227)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR76_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68442.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5637..6350
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR77_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68443.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_7
unknown

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comp(6925..8172)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037B0578
SCN18_30_10_14_R1_B_scaffold_2665_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8342..8908)
DNA (567bp) protein (189aa)
Putative thiamine-phosphate pyrophosphorylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR78_9SPHN
putative thiamine-phosphate pyrophosphorylase
Putative thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:BAK68444.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8952..9620
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR79_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68445.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9774..12611)
DNA (2838bp) protein (946aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR80_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK68446.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12752..13423)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR81_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68447.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13531..14349
DNA (819bp) protein (273aa)
UPF0176 protein SLG_37730 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR82_9SPHN
hypothetical protein
UPF0176 protein SLG_37730 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14305..14976)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR83_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68449.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14976..15332)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR83_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68449.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15410..17821)
DNA (2412bp) protein (804aa)
Lhr-like helicase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR84_9SPHN
Lhr-like helicase
Lhr-like helicase {ECO:0000313|EMBL:BAK68450.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18053..19435)
DNA (1383bp) protein (461aa)
Phosphoglucomutase/phosphomannomutase {ECO:0000313|EMBL:BAK68452.1}; EC=5.4.2.2 {ECO:0000313|EMBL:BAK68452.1};; EC=5.4.2.8 {ECO:0000313|EMBL:BAK68452.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphoglucomutase/phosphomannomutase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR86_9SPHN
phosphoglucomutase/phosphomannomutase
SCN18_30_10_14_R1_B_scaffold_2665_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19485..19913)
DNA (429bp) protein (143aa)
DnaJ-class molecular chaperone n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR87_9SPHN
DnaJ-class molecular chaperone
DnaJ-class molecular chaperone {ECO:0000313|EMBL:BAK68453.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19918..20718)
DNA (801bp) protein (267aa)
ParA-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR88_9SPHN
ParA-like protein
ParA-like protein {ECO:0000313|EMBL:BAK68454.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20914..21669
DNA (756bp) protein (252aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Pantothenate synthetase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR89_9SPHN
panC; pantothenate synthetase
SCN18_30_10_14_R1_B_scaffold_2665_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21806..22114
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR90_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68456.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2665_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22155..22529)
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR91_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68457.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 21 items

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