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SCN18_30_10_14_R1_B_scaffold_2702

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2702_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..268)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71375.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_30_10_14_R1_B_scaffold_2702_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(329..1777)
DNA (1449bp) protein (483aa)
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:BAK65615.1}; EC=1.2.1.- {ECO:0000313|EMBL:BAK65615.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD-dependent aldehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX6_9SPHN
NAD-dependent aldehyde dehydrogenase
SCN18_30_10_14_R1_B_scaffold_2702_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1849..2862)
DNA (1014bp) protein (338aa)
Putative MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX5_9SPHN
putative MarR family transcriptional regulator
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65614.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2702_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3002..3403
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65613.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2702_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3441..3929
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65612.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2702_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3991..4479
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65611.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2702_7
unknown

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comp(4501..4881)
DNA (381bp) protein (127aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2702_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4912..6588)
DNA (1677bp) protein (559aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INX0_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK65609.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2702_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6753..9647)
DNA (2895bp) protein (965aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INW9_9SPHN
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65608.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
TonB-dependent receptor-like protein
SCN18_30_10_14_R1_B_scaffold_2702_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9881..12487)
DNA (2607bp) protein (869aa)
Putative M1 family peptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJH2_9SPHN
putative M1 family peptidase
Putative M1 family peptidase {ECO:0000313|EMBL:BAK64842.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2702_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12591..13850)
DNA (1260bp) protein (420aa)
Para-nitrophenol 4-monooxygenase n=1 Tax=Pseudomonas sp. (strain WBC-3) RepID=PNPA_PSEWB
para-nitrophenol 4-monooxygenase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCN18_30_10_14_R1_B_scaffold_2702_12
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13946..15031
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Streptomyces scabies (strain 87.22) RepID=C9YZ19_STRSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBG69474.1}; TaxID=680198 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
SCN18_30_10_14_R1_B_scaffold_2702_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15009..15650)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Gordonia sputi NBRC 100414 RepID=H5U412_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB40470.1}; TaxID=1089453 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia sputi NBRC 100414.;"
aminoglycoside phosphotransferase
SCN18_30_10_14_R1_B_scaffold_2702_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16422..17414)
DNA (993bp) protein (331aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO56346.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO56346.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECE0_9SPHN
alcohol dehydrogenase
SCN18_30_10_14_R1_B_scaffold_2702_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17563..18354
DNA (792bp) protein (264aa)
UPI0003D672DD related cluster n=1 Tax=unknown RepID=UPI0003D672DD
Uncharacterized protein {ECO:0000313|EMBL:AHE52127.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
UspA domain-containing protein
SCN18_30_10_14_R1_B_scaffold_2702_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18432..19019)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI00035E0607
putative NAD(P)H dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_30_10_14_R1_B_scaffold_2702_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19016..21694)
DNA (2679bp) protein (893aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GNA0_9SPHN
Acetyltransferase family protein {ECO:0000313|EMBL:KFG90016.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
CoA-binding domain-containing protein
SCN18_30_10_14_R1_B_scaffold_2702_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21881..22372
DNA (492bp) protein (164aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HS39_9SPHN
two-component system sensor histidine kinase
Displaying 18 items

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