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SCN18_30_10_14_R1_B_scaffold_2813

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2813_1
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..714)
DNA (714bp) protein (238aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPH8_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK68159.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_2
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1067..1786
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI0_9SPHN
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53318.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2813_3
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1862..2866
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53317.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2813_4
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

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2844..3590
DNA (747bp) protein (249aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO53316.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO53316.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI2_9SPHN
putative oxidoreductase
SCN18_30_10_14_R1_B_scaffold_2813_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3660..4514)
DNA (855bp) protein (285aa)
OmpA family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIW3_9SPHN
OmpA family protein
OmpA family protein {ECO:0000313|EMBL:BAK67133.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4732..4926)
DNA (195bp) protein (65aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI4_9SPHN
4-hydroxybenzoate transporter {ECO:0000313|EMBL:GAO53314.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
SCN18_30_10_14_R1_B_scaffold_2813_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5044..6111)
DNA (1068bp) protein (356aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI4_9SPHN
4-hydroxybenzoate transporter {ECO:0000313|EMBL:GAO53314.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
SCN18_30_10_14_R1_B_scaffold_2813_8
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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6302..7282
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPK0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68181.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_trna_1
unknown

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comp(7477..7558)
DNA (82bp)
transferRNA Leu
SCN18_30_10_14_R1_B_scaffold_2813_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7715..9184
DNA (1470bp) protein (490aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMU4_9SPHN
zwf; glucose-6-phosphate dehydrogenase
SCN18_30_10_14_R1_B_scaffold_2813_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9174..11006
DNA (1833bp) protein (611aa)
Phosphogluconate dehydratase {ECO:0000313|EMBL:BAK67884.1}; EC=4.2.1.12 {ECO:0000313|EMBL:BAK67884.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphogluconate dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMU5_9SPHN
edd; phosphogluconate dehydratase
SCN18_30_10_14_R1_B_scaffold_2813_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11003..11860
DNA (858bp) protein (286aa)
Glucokinase {ECO:0000313|EMBL:BAK67885.1}; EC=2.7.1.2 {ECO:0000313|EMBL:BAK67885.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glucokinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMU6_9SPHN
glk; glucokinase
SCN18_30_10_14_R1_B_scaffold_2813_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11857..12471
DNA (615bp) protein (205aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMU7_9SPHN
2-dehydro-3-deoxyphosphogluconate aldolase
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate {ECO:0000313|EMBL:BAK67886.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12498..13331)
DNA (834bp) protein (278aa)
Putative AraC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMU9_9SPHN
putative AraC family transcriptional regulator
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:BAK67888.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13432..13920)
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMV0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67889.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_15
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14116..15039
DNA (924bp) protein (308aa)
Glyoxylate reductase {ECO:0000313|EMBL:BAK67890.1}; EC=1.1.1.- {ECO:0000313|EMBL:BAK67890.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glyoxylate reductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMV1_9SPHN
glyoxylate reductase
SCN18_30_10_14_R1_B_scaffold_2813_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15195..15590
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000363357E
Uncharacterized protein {ECO:0000313|EMBL:AKH41518.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2813_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15691..16443
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=uncultured Oceanospirillales bacterium HF4000_21D01 RepID=E7C8B7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH41519.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2813_18
unknown

Not on your lists

comp(16486..17283)
DNA (798bp) protein (266aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2813_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17296..17499)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMV5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67894.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17505..18908)
DNA (1404bp) protein (468aa)
2-nitropropane dioxygenase family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMV6_9SPHN
2-nitropropane dioxygenase
2-nitropropane dioxygenase family protein {ECO:0000313|EMBL:BAK67895.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2813_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19008..19751)
DNA (744bp) protein (248aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAK67896.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAK67896.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMV7_9SPHN
putative glycosyltransferase
Displaying 22 items

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