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SCN18_30_10_14_R1_B_scaffold_2925

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2925_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1559)
DNA (1557bp) protein (519aa)
Putative ABC transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJL0_9SPHN
putative ABC transporter
Putative ABC transporter {ECO:0000313|EMBL:BAK64880.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_2
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1685..3019)
DNA (1335bp) protein (445aa)
Na+/H+-dicarboxylate symporters n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MXR7_9SPHN
Dicarboxylate/amino acid:cation (Na+ or H+) symporter {ECO:0000313|EMBL:KFG91335.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
dicarboxylate/amino acid:cation (Na+ or H+) symporter
SCN18_30_10_14_R1_B_scaffold_2925_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3330..3755)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJR8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64938.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3762..4379)
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJR9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64939.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..5440)
DNA (1071bp) protein (357aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Chorismate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS0_9SPHN
aroC; chorismate synthase
SCN18_30_10_14_R1_B_scaffold_2925_6
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5588..5719)
DNA (132bp) protein (44aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK78_9SPHN
fabI; enoyl-ACP reductase
SCN18_30_10_14_R1_B_scaffold_2925_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5755..6348)
DNA (594bp) protein (198aa)
enoyl-[acyl-carrier-protein] reductase [NADH] (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
enoyl-ACP reductase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000370165A
SCN18_30_10_14_R1_B_scaffold_2925_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6345..7289)
DNA (945bp) protein (315aa)
Putative ribonuclease {ECO:0000313|EMBL:BAK64942.1}; EC=3.1.-.- {ECO:0000313|EMBL:BAK64942.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative ribonuclease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK79_9SPHN
putative ribonuclease
SCN18_30_10_14_R1_B_scaffold_2925_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7503..7913)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64906.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8074..8802)
DNA (729bp) protein (243aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Hydroxyacylglutathione hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN5_9SPHN
gloB; hydroxyacylglutathione hydrolase
SCN18_30_10_14_R1_B_scaffold_2925_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8857..9288)
DNA (432bp) protein (144aa)
Lactoylglutathione lyase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN4_9SPHN
lactoylglutathione lyase
Lactoylglutathione lyase {ECO:0000313|EMBL:BAK64904.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9399..10118
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64903.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..11093)
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJG0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64830.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11093..11836)
DNA (744bp) protein (248aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF9_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK64829.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11892..12974)
DNA (1083bp) protein (361aa)
Peptidase M48 family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF7_9SPHN
peptidase M48 family protein
Peptidase M48 family protein {ECO:0000313|EMBL:BAK64827.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12989..14065)
DNA (1077bp) protein (359aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF6_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK64826.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2925_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14389..15933
DNA (1545bp) protein (515aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Threonine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYT_NOVAD
Displaying 17 items

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