ggKbase home page

SCN18_30_10_14_R1_B_scaffold_2930

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2930_1
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1640)
DNA (1638bp) protein (546aa)
TonB-dependent receptor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTX1_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:CCW18823.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
TonB-dependent receptor
SCN18_30_10_14_R1_B_scaffold_2930_2
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2075..3187
DNA (1113bp) protein (371aa)
adhI; Alcohol dehydrogenase class-3 (EC:1.1.1.1)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
alcohol dehydrogenase n=1 Tax=Sphingobium xenophagum RepID=UPI000365FC07
SCN18_30_10_14_R1_B_scaffold_2930_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3211..3606
DNA (396bp) protein (132aa)
Glyoxalase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HEG5_9SPHN
Glyoxalase {ECO:0000313|EMBL:EQB11392.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2930_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3785..4030
DNA (246bp) protein (82aa)
Ferredoxin n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IT49_9SPHN
ferredoxin
Ferredoxin {ECO:0000313|EMBL:BAK66559.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2930_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4036..4707
DNA (672bp) protein (224aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H0_NOVAD
4-hydroxy-4-methyl-2-oxoadipate aldolase {ECO:0000313|EMBL:KHS44427.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2930_6
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4704..5945
DNA (1242bp) protein (414aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IT48_9SPHN
Ferredoxin reductase {ECO:0000313|EMBL:GAO54484.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD-dependent oxidoreductase
SCN18_30_10_14_R1_B_scaffold_2930_7
Acinetobacter sp. NIPH 809_SCNpilot_P_inoc_Acinetobacter_41_9_partial, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5942..6418
DNA (477bp) protein (159aa)
Putative membrane protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAG8_NOVAD
hypothetical protein
SnoaL-like domain protein {ECO:0000313|EMBL:KHS47024.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCN18_30_10_14_R1_B_scaffold_2930_8
Mucilaginibacter paludis_SCNPILOT_CONT_1000_P_Mucilaginibacter_44_25, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6457..7509
DNA (1053bp) protein (351aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IT11_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK66521.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2930_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7635..8795
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HSG9_9SPHN
flavin oxidoreductase / NADH oxidase family protein
Flavin oxidoreductase / NADH oxidase family protein {ECO:0000313|EMBL:AIO36223.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
SCN18_30_10_14_R1_B_scaffold_2930_10
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

8805..10496
DNA (1692bp) protein (564aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036BBD8F
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCN18_30_10_14_R1_B_scaffold_2930_11
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10554..11198)
DNA (645bp) protein (215aa)
putative NADH-flavin reductase (EC:1.-.-.-)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus CAG:158 RepID=R6L5T8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB69617.1}; TaxID=1263038 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulosilyticus CAG:158.;"
SCN18_30_10_14_R1_B_scaffold_2930_12
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11230..11631)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4C1F0
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67001.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2930_13
SCNpilot_BF_INOC_Flavobacterium_39_30, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11652..12395)
DNA (744bp) protein (248aa)
oxidoreductase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000367A024
short-chain dehydrogenase/reductase
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:AGB73077.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCN18_30_10_14_R1_B_scaffold_2930_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12622..13665
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000372227B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71714.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_30_10_14_R1_B_scaffold_2930_15
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13662..14822
DNA (1161bp) protein (387aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN7_9SPHN
Colicin I receptor {ECO:0000313|EMBL:AKH42954.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
SCN18_30_10_14_R1_B_scaffold_2930_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14916..16256
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J261_9SPHN
4-hydroxybenzoate transporter {ECO:0000313|EMBL:EYF07251.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2930_17
Acinetobacter sp. NIPH 809_SCNpilot_P_inoc_Acinetobacter_41_9_partial, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16468..16866)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IT32_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66542.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2930_18
unknown

Not on your lists

comp(16860..16976)
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 18 items

View Taxonomy