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SCN18_30_10_14_R1_B_scaffold_4769

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_4769_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(66..548)
DNA (483bp) protein (161aa)
YjgF-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR92_9SPHN
hypothetical protein
YjgF-family protein {ECO:0000313|EMBL:BAK68458.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(564..1208)
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR93_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68459.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1205..1477)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR94_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68460.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1546..1929
DNA (384bp) protein (128aa)
Putative response regulator receiver protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR95_9SPHN
putative response regulator receiver protein
Putative response regulator receiver protein {ECO:0000313|EMBL:BAK68461.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2025..2192)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=2 Tax=Novosphingobium RepID=F6IK26_9SPHN
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_30_10_14_R1_B_scaffold_4769_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2486..2797
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR97_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68463.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2923..3414
DNA (492bp) protein (164aa)
DNA protection during starvation protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR99_9SPHN
DNA protection during starvation protein
DNA protection during starvation protein {ECO:0000313|EMBL:BAK68465.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3458..4336
DNA (879bp) protein (293aa)
Putative gluconolactonase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJJ4_9SPHN
putative gluconolactonase
Putative gluconolactonase {ECO:0000313|EMBL:BAK64864.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4769_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4343..4576)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002E4AC27
Uncharacterized protein {ECO:0000313|EMBL:AHE55695.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_4769_10
unknown

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4639..4854
DNA (216bp) protein (72aa)
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_4769_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4892..6241
DNA (1350bp) protein (450aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J2F5_9SPHN
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
SCN18_30_10_14_R1_B_scaffold_4769_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6238..7167
DNA (930bp) protein (310aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Beta-lactamase class A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJJ9_9SPHN
beta-lactamase class A
SCN18_30_10_14_R1_B_scaffold_4769_13
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7222..7533)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDE0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81496.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Conserved Putative membrane protein
SCN18_30_10_14_R1_B_scaffold_4769_14
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7549..7920)
DNA (372bp) protein (124aa)
peptidylprolyl isomerase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E6E2
putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type
Putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type {ECO:0000313|EMBL:AJA09048.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCN18_30_10_14_R1_B_scaffold_4769_15
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7878..8528)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00031C4116
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:EIZ78983.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_4769_trna_1
unknown

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8589..8676
DNA (88bp)
transferRNA Ser
SCN18_30_10_14_R1_B_scaffold_4769_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8838..9689
DNA (852bp) protein (284aa)
integrase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B5F35E
integrase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
Displaying 17 items

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