ggKbase home page

SCN18_30_10_14_R1_B_scaffold_6223

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_6223_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..613)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4507F
Uncharacterized protein {ECO:0000313|EMBL:ENY82073.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_6223_2
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

858..3014
DNA (2157bp) protein (719aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
katG; catalase/peroxidase (EC:1.11.1.6)
Catalase-peroxidase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YRT0_9CAUL
SCN18_30_10_14_R1_B_scaffold_6223_3
unknown

Not on your lists

3141..3410
DNA (270bp) protein (90aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_6223_4
unknown

Not on your lists

comp(3447..3650)
DNA (204bp) protein (68aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_6223_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3883..6918)
DNA (3036bp) protein (1012aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B392C8
Colicin I receptor {ECO:0000313|EMBL:AKH41501.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
SCN18_30_10_14_R1_B_scaffold_6223_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7418..8614
DNA (1197bp) protein (399aa)
Vanillin dehydrogenase n=2 Tax=Sphingomonadaceae RepID=G2IMC6_9SPHN
ligV; vanillin dehydrogenase
Vanillin dehydrogenase {ECO:0000313|EMBL:BAF45815.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCN18_30_10_14_R1_B_scaffold_6223_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8734..9039)
DNA (306bp) protein (102aa)
AraC family transcriptional regulator, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69FEF
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EAT09471.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
AraC family transcriptional regulator
Displaying 7 items

View Taxonomy