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SCN18_30_10_14_R1_B_scaffold_6761

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_6761_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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180..461
DNA (282bp) protein (94aa)
Integration host factor subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH0_9SPHN
ihfB; integration host factor subunit beta
Integration host factor subunit beta {ECO:0000313|EMBL:BAK66330.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_trna_1
unknown

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560..642
DNA (83bp)
transferRNA Leu
SCN18_30_10_14_R1_B_scaffold_6761_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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666..2225
DNA (1560bp) protein (520aa)
Putative ABC transporter substrate binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG9_9SPHN
putative ABC transporter substrate binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAK66329.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2273..2704
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66328.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2713..3471)
DNA (759bp) protein (253aa)
Putative ribonuclease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG7_9SPHN
putative ribonuclease
Putative ribonuclease {ECO:0000313|EMBL:BAK66327.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3479..4243)
DNA (765bp) protein (255aa)
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) {ECO:0000313|EMBL:BAK66326.1}; EC=2.4.2.19 {ECO:0000313|EMBL:BAK66326.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG6_9SPHN
nadC; nicotinate-nucleotide pyrophosphorylase
SCN18_30_10_14_R1_B_scaffold_6761_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4240..4356)
DNA (117bp) protein (39aa)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B960
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:KFD29847.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
nadC; nicotinate-nucleotide pyrophosphorylase
SCN18_30_10_14_R1_B_scaffold_6761_7
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4353..6488)
DNA (2136bp) protein (712aa)
Putative prolyl endopeptidase {ECO:0000313|EMBL:BAK66325.1}; EC=3.4.21.26 {ECO:0000313|EMBL:BAK66325.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative prolyl endopeptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG5_9SPHN
putative prolyl endopeptidase
SCN18_30_10_14_R1_B_scaffold_6761_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6535..7533)
DNA (999bp) protein (333aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Quinolinate synthase A n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KEJ1_9SPHN
nadA; quinolinate synthase A
SCN18_30_10_14_R1_B_scaffold_6761_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7588..8307)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K580_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB31829.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_6761_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8410..9297)
DNA (888bp) protein (296aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG1_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK66321.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9714..10043)
DNA (330bp) protein (110aa)
Glutaredoxin n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISF8_9SPHN
monothiol glutaredoxin
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10105..10338)
DNA (234bp) protein (78aa)
YrbA protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MW33_9SPHN
YrbA protein {ECO:0000313|EMBL:CCW19772.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
BolA family protein
SCN18_30_10_14_R1_B_scaffold_6761_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10348..10671)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISF6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66316.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_6761_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10762..11493)
DNA (732bp) protein (244aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISF5_9SPHN
leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
SCN18_30_10_14_R1_B_scaffold_6761_15
unknown

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comp(11584..11691)
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_6761_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11700..12110)
DNA (411bp) protein (137aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISF3_9SPHN
leuC; 3-isopropylmalate dehydratase large subunit
Displaying 17 items

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