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SCN18_30_10_14_R1_B_scaffold_1270

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1270_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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156..992
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381CD10
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30142.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
amidohydrolase
SCN18_30_10_14_R1_B_scaffold_1270_2
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

996..1715
DNA (720bp) protein (240aa)
3-oxoacid CoA-transferase, A subunit (EC:2.8.3.5)
Succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HSA8_9SPHN
CatI {ECO:0000313|EMBL:AHZ46839.1}; TaxID=595605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium wenxiniae (strain DSM 21828 / JZ-1).;"
SCN18_30_10_14_R1_B_scaffold_1270_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1813..2070)
DNA (258bp) protein (86aa)
transglycosylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B48E73
hypothetical protein
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34149.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCN18_30_10_14_R1_B_scaffold_1270_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2196..2792)
DNA (597bp) protein (199aa)
methyltransferase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B7441C
Methyltransferase {ECO:0000313|EMBL:AJR26260.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
putative methyltransferase
SCN18_30_10_14_R1_B_scaffold_1270_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2933..6553)
DNA (3621bp) protein (1207aa)
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:BAK65383.1}; EC=1.5.1.12 {ECO:0000313|EMBL:BAK65383.1};; EC=1.5.99.8 {ECO:0000313|EMBL:BAK65383.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMC8_9SPHN
putA; proline dehydrogenase
SCN18_30_10_14_R1_B_scaffold_1270_6
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6652..7113
DNA (462bp) protein (154aa)
Lrp/AsnC-family transcriptional regulator n=3 Tax=Sphingobium RepID=D4Z0J8_SPHJU
ArsR family transcriptional regulator {ECO:0000313|EMBL:AJR25814.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
Lrp/AsnC-family transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_1270_7
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7217..7750
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQT1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43824.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1270_8
unknown

Not on your lists

comp(7880..8485)
DNA (606bp) protein (202aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1270_9
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8560..9642)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TK50_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK53138.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCN18_30_10_14_R1_B_scaffold_1270_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9916..11475)
DNA (1560bp) protein (520aa)
Putative esterase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN48_9SPHN
Chlorogenate esterase {ECO:0000313|EMBL:GAO57029.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative esterase
SCN18_30_10_14_R1_B_scaffold_1270_11
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11685..12467
DNA (783bp) protein (261aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_30_10_14_R1_B_scaffold_1270_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12591..13460)
DNA (870bp) protein (290aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ36_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK65864.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_13
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13657..15279
DNA (1623bp) protein (541aa)
Putative dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI6_9SPHN
putative dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:BAK64856.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_14
unknown

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15411..16091
DNA (681bp) protein (227aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1270_15
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16096..17601
DNA (1506bp) protein (502aa)
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:BAK67490.1}; EC=1.2.1.27 {ECO:0000313|EMBL:BAK67490.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT8_9SPHN
mmsA; methylmalonate-semialdehyde dehydrogenase
SCN18_30_10_14_R1_B_scaffold_1270_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17744..19876)
DNA (2133bp) protein (711aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67489.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_17
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19947..20744)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67488.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20741..22633)
DNA (1893bp) protein (631aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67487.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22623..24701)
DNA (2079bp) protein (693aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67486.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_20
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24698..25306)
DNA (609bp) protein (203aa)
Putative glutathione S-transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT2_9SPHN
putative glutathione S-transferase
Putative glutathione S-transferase {ECO:0000313|EMBL:BAK67484.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_21
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25324..26874)
DNA (1551bp) protein (517aa)
Sodium/solute symporter family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT1_9SPHN
sodium/solute symporter family protein
Sodium/solute symporter family protein {ECO:0000313|EMBL:BAK67483.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_22
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26871..27086)
DNA (216bp) protein (72aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT0_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK67482.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_23
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27242..28189
DNA (948bp) protein (316aa)
Putative LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS9_9SPHN
putative LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:BAK67481.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_24
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28308..29468
DNA (1161bp) protein (387aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:BAK67480.1}; EC=1.1.1.- {ECO:0000313|EMBL:BAK67480.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS8_9SPHN
alcohol dehydrogenase
SCN18_30_10_14_R1_B_scaffold_1270_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29601..30308)
DNA (708bp) protein (236aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5)
Acetate/3-ketoacid CoA transferase, subunit A n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GZG4_CAUCN
CatI {ECO:0000313|EMBL:AHZ46839.1}; TaxID=595605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium wenxiniae (strain DSM 21828 / JZ-1).;"
SCN18_30_10_14_R1_B_scaffold_1270_26
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30320..31339)
DNA (1020bp) protein (340aa)
Putative ABC transporter substrate binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS45_9SPHN
putative ABC transporter substrate binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAK66205.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_27
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31336..32169)
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67477.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1270_28
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32453..33391
DNA (939bp) protein (313aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:KEQ53823.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KEQ53823.1};; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F257_SPHCR
SCN18_30_10_14_R1_B_scaffold_1270_29
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33245..34189)
DNA (945bp) protein (315aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2A6_SPHCR
CysB family transcriptional regulator {ECO:0000313|EMBL:AJR23241.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
LysR family transcriptional regulator
Displaying 29 items

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