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SCN18_30_10_14_R1_B_scaffold_1626

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1626_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..242)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65992.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239..1375)
DNA (1137bp) protein (379aa)
Flagellar P-ring protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW9_9SPHN
flgI; flagellar P-ring protein FlgI
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1392..2078)
DNA (687bp) protein (229aa)
Flagellar L-ring protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW8_9SPHN
flgH; flagellar L-ring protein FlgH
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2082..2870)
DNA (789bp) protein (263aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW7_9SPHN
flgG; flagellar basal-body rod protein FlgG
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:BAK65989.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2894..3637)
DNA (744bp) protein (248aa)
Flagellar basal-body rod protein FlgF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW6_9SPHN
flgF; flagellar basal-body rod protein FlgF
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:BAK65988.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_6
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3670..4986)
DNA (1317bp) protein (439aa)
flagellar basal body FlaE n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488F4B
flagellar basal body FlaE domain-containing protein
Flagellar basal body FlaE domain-containing protein {ECO:0000313|EMBL:AGH48929.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_30_10_14_R1_B_scaffold_1626_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5017..5706)
DNA (690bp) protein (230aa)
Flagellar basal-body rod modification protein FlgD n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW4_9SPHN
flgD; flagellar basal-body rod modification protein FlgD
Flagellar basal-body rod modification protein FlgD {ECO:0000313|EMBL:BAK65986.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5703..6113)
DNA (411bp) protein (137aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW3_9SPHN
flgC; flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6110..6466)
DNA (357bp) protein (119aa)
Flagellar basal body rod protein FlgB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW2_9SPHN
flgB; flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6721..7386
DNA (666bp) protein (222aa)
Chemotaxis protein MotA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW1_9SPHN
motA; chemotaxis protein MotA
Chemotaxis protein MotA {ECO:0000313|EMBL:BAK65983.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7395..7892
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQW0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65982.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7988..8560
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65981.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8615..8905
DNA (291bp) protein (97aa)
Putative negative regulator of flagellin synthesis n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV8_9SPHN
flgM; putative negative regulator of flagellin synthesis
Putative negative regulator of flagellin synthesis {ECO:0000313|EMBL:BAK65980.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8920..9225
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65979.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9464..10366
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65978.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10376..12481
DNA (2106bp) protein (702aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV5_9SPHN
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:BAK65977.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
flhA; flagellar biosynthesis protein FlhA
SCN18_30_10_14_R1_B_scaffold_1626_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12635..13363
DNA (729bp) protein (243aa)
RNA polymerase sigma factor for flagellar operon FliA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV4_9SPHN
fliA; RNA polymerase sigma factor for flagellar operon FliA
RNA polymerase sigma factor for flagellar operon FliA {ECO:0000313|EMBL:BAK65976.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13489..13713
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2DJX8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETI65205.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1626_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13821..14693
DNA (873bp) protein (291aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV3_9SPHN
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
SCN18_30_10_14_R1_B_scaffold_1626_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14771..15475
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65974.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15501..16832
DNA (1332bp) protein (444aa)
Putative PQQ enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV1_9SPHN
putative PQQ enzyme
Putative PQQ enzyme {ECO:0000313|EMBL:BAK65973.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_22
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16986..18368
DNA (1383bp) protein (461aa)
GTPase Der n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV0_9SPHN
engA; GTP-binding protein EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18349..18582
DNA (234bp) protein (78aa)
Redox protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H806_9SPHN
Redox protein {ECO:0000313|EMBL:EZP72790.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1626_24
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18659..19117
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65970.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_25
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19237..19671
DNA (435bp) protein (145aa)
NAD-dependent formate dehydrogenase gamma subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU7_9SPHN
NAD-dependent formate dehydrogenase subunit gamma
NAD-dependent formate dehydrogenase gamma subunit {ECO:0000313|EMBL:BAK65969.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1626_26
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19671..20147
DNA (477bp) protein (159aa)
NAD-dependent formate dehydrogenase beta subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU6_9SPHN
NAD-dependent formate dehydrogenase subunit beta
NAD-dependent formate dehydrogenase beta subunit {ECO:0000313|EMBL:BAK65968.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 26 items

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