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SCN18_30_10_14_R1_B_scaffold_1720

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1720_1
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(153..1688)
DNA (1536bp) protein (512aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
Pyruvate kinase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJF2_9SPHN
pyruvate kinase
SCN18_30_10_14_R1_B_scaffold_1720_2
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

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comp(1768..3375)
DNA (1608bp) protein (536aa)
Potassium efflux system KefA protein / Small-conductance mechanosensitive channel n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U6G2_9PROT
Sphingomonas taxi strain 30a NODE_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25920.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
mechanosensitive ion channel protein MscS
SCN18_30_10_14_R1_B_scaffold_1720_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3469..3879)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJF5_9SPHN
hypothetical protein
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCN18_30_10_14_R1_B_scaffold_1720_4
unknown

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comp(3876..4334)
DNA (459bp) protein (153aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1720_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4381..6843)
DNA (2463bp) protein (821aa)
ATPase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A9C2B9
ATPase {ECO:0000313|EMBL:AJR26708.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
heavy metal translocating P-type ATPase
SCN18_30_10_14_R1_B_scaffold_1720_6
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6840..7370)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I7C5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFD26957.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCN18_30_10_14_R1_B_scaffold_1720_7
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7370..7672)
DNA (303bp) protein (101aa)
Recombination protein RecR n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJE3_9SPHN
Recombination protein RecR {ECO:0000313|EMBL:EHJ58584.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1720_8
unknown

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comp(7662..7760)
DNA (99bp) protein (33aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1720_9
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7760..8371)
DNA (612bp) protein (204aa)
Cation diffusion facilitator family transporter n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CT91_SPHYA
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EKU74161.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
RND transporter
SCN18_30_10_14_R1_B_scaffold_1720_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8364..8861)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BF9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKC25595.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCN18_30_10_14_R1_B_scaffold_1720_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8933..12175)
DNA (3243bp) protein (1081aa)
cation transporter n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000364BF1B
Cation transporter {ECO:0000313|EMBL:KFD26961.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
CzcA family heavy metal efflux pump
SCN18_30_10_14_R1_B_scaffold_1720_12
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12180..13355)
DNA (1176bp) protein (392aa)
hemolysin D n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036EAE24
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KEZ16604.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
RND family efflux transporter MFP subunit
SCN18_30_10_14_R1_B_scaffold_1720_13
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13359..14621)
DNA (1263bp) protein (421aa)
transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C778
Transporter {ECO:0000313|EMBL:KEZ12088.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
outer membrane efflux protein
SCN18_30_10_14_R1_B_scaffold_1720_14
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14693..15022)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Alphaproteobacteria RepID=UPI000262C777
Uncharacterized protein {ECO:0000313|EMBL:KFD26964.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1720_15
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15281..15604
DNA (324bp) protein (108aa)
SCN18_30_10_14_R1_B_scaffold_1720_16
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15663..16484
DNA (822bp) protein (274aa)
Methyltransferase domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q960_BREDI
Uncharacterized protein {ECO:0000313|EMBL:KKC25620.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
type 11 methyltransferase
SCN18_30_10_14_R1_B_scaffold_1720_17
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16558..16968
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BFE
Sphingomonas taxi strain 30a NODE_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25927.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1720_18
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16973..17848)
DNA (876bp) protein (292aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EBD323
Sphingomonas taxi strain 30a NODE_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25926.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
membrane protein
Displaying 18 items

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