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SCN18_30_10_14_R1_B_scaffold_3484

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3484_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(329..1123)
DNA (795bp) protein (265aa)
LPS-assembly lipoprotein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJL0_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig169, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50617.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
short-chain dehydrogenase/reductase SDR
SCN18_30_10_14_R1_B_scaffold_3484_2
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1144..1938)
DNA (795bp) protein (265aa)
oxidoreductase n=1 Tax=Arhodomonas aquaeolei RepID=UPI00037C8073
Oxidoreductase {ECO:0000313|EMBL:KGT74671.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
short-chain dehydrogenase
SCN18_30_10_14_R1_B_scaffold_3484_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1964..3460)
DNA (1497bp) protein (499aa)
aldehyde dehydrogenase n=1 Tax=Sphingobium xenophagum RepID=UPI0003688918
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:KFL47005.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
aldehyde dehydrogenase
SCN18_30_10_14_R1_B_scaffold_3484_4
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3494..7318)
DNA (3825bp) protein (1275aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ8_9SPHN
Colicin I receptor {ECO:0000313|EMBL:AKH41384.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
SCN18_30_10_14_R1_B_scaffold_3484_5
unknown

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comp(7618..8034)
DNA (417bp) protein (139aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3484_6
unknown

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8252..8542
DNA (291bp) protein (97aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3484_7
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8656..9195)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G762_NOVAD
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:GAO56042.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_3484_8
unknown

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comp(9208..10041)
DNA (834bp) protein (278aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3484_9
SCNpilot_P_inoc_Microbacterium_67_17, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(10077..11477)
DNA (1401bp) protein (467aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
beta-galactosidase (EC:3.2.1.21)
Beta-glucosidase. Glycosyl Hydrolase family 1 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUD7_RUBXD
SCN18_30_10_14_R1_B_scaffold_3484_10
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11521..13743)
DNA (2223bp) protein (741aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCQ6_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB55770.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor
SCN18_30_10_14_R1_B_scaffold_3484_11
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

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13989..14636
DNA (648bp) protein (216aa)
TetR family transcriptional regulator n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZK3_ANATU
Uncharacterized protein {ECO:0000313|EMBL:KJC63845.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
TetR family transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_3484_12
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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14771..15973
DNA (1203bp) protein (401aa)
major facilitator transporter n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B66EC1
ScaffoldA29, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29410.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
nucleoside:H symporter
SCN18_30_10_14_R1_B_scaffold_3484_13
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16180..16575)
DNA (396bp) protein (132aa)
Putative pseudoazurin n=2 Tax=Sphingobium RepID=D4Z769_SPHJU
putative pseudoazurin
Putative pseudoazurin {ECO:0000313|EMBL:EIM68287.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
Displaying 13 items

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