ggKbase home page

SCN18_30_10_14_R1_B_scaffold_3620

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3620_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(252..800)
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INR8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68047.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_2
unknown

Not on your lists

comp(836..931)
DNA (96bp) protein (32aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3620_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

999..1340
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INR7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68046.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_4
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1402..1680
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INR6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68045.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1722..2789)
DNA (1068bp) protein (356aa)
DNA replication and repair protein RecF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INR5_9SPHN
recF; DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2887..3438
DNA (552bp) protein (184aa)
Alkyl hydroperoxide reductase n=1 Tax=Sphingobium sp. SYK-6 RepID=C0SUJ7_9SPHN
peroxiredoxin
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:BAH56681.1}; Peroxiredoxin {ECO:0000313|EMBL:BAK68043.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3750..4619
DNA (870bp) protein (290aa)
C alpha-dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=C0SUJ9_9SPHN
ligL; C alpha-dehydrogenase
C alpha-dehydrogenase {ECO:0000313|EMBL:BAK68041.1}; Calpha-dehydrogenase {ECO:0000313|EMBL:BAH56683.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4817..5947
DNA (1131bp) protein (377aa)
Soluble hydrogenase 42 kDa subunit {ECO:0000313|EMBL:AKH42755.1}; EC=1.12.-.- {ECO:0000313|EMBL:AKH42755.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative aminotransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILM7_9SPHN
putative aminotransferase
SCN18_30_10_14_R1_B_scaffold_3620_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6087..6275
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1F6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48598.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_3620_10
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6368..7102)
DNA (735bp) protein (245aa)
methyltransferase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDCAE
putative methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:AGU10244.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCN18_30_10_14_R1_B_scaffold_3620_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7187..7924)
DNA (738bp) protein (246aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ95_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK68269.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7936..8334)
DNA (399bp) protein (133aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ95_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK68269.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8552..9220)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD606
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA09163.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCN18_30_10_14_R1_B_scaffold_3620_14
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9313..9597)
DNA (285bp) protein (95aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=J2CX43_9SPHN
Putative lipoprotein {ECO:0000313|EMBL:KGB53872.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_3620_15
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9843..10385)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILA2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65165.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_16
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11318..11815
DNA (498bp) protein (166aa)
Putative acetyltransferase {ECO:0000313|EMBL:BAK65166.1}; EC=2.3.1.- {ECO:0000313|EMBL:BAK65166.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative acetyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILA3_9SPHN
putative acetyltransferase
SCN18_30_10_14_R1_B_scaffold_3620_17
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11969..12280)
DNA (312bp) protein (104aa)
Putative phosphonate metabolizing protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKF3_9SPHN
putative phosphonate metabolizing protein
Putative phosphonate metabolizing protein {ECO:0000313|EMBL:BAK65016.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3620_18
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12277..12504)
DNA (228bp) protein (76aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
Elongation factor 4 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INR0_9SPHN
lepA; GTP-binding protein LepA
Displaying 18 items

View Taxonomy