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SCN18_30_10_14_R1_P_scaffold_605

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_P_scaffold_605_1
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..135
DNA (135bp) protein (45aa)
SCN18_30_10_14_R1_P_scaffold_605_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(331..1269)
DNA (939bp) protein (313aa)
DNA polymerase LigD, polymerase domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQH8_PSEUX
DNA polymerase LigD, polymerase domain-containing protein
DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:AEA22576.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCN18_30_10_14_R1_P_scaffold_605_3
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1720..2175)
DNA (456bp) protein (152aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
Phosphodiesterase, MJ0936 family n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PY09_KRIFD
phosphodiesterase, MJ0936 family
SCN18_30_10_14_R1_P_scaffold_605_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2208..2582)
DNA (375bp) protein (125aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WB30_ACTMD
FKBP-type peptidylprolyl isomerase
SCN18_30_10_14_R1_P_scaffold_605_5
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2781..3320
DNA (540bp) protein (180aa)
membrane protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00037A0638
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:AEY87703.1}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
SCN18_30_10_14_R1_P_scaffold_605_6
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3327..4679)
DNA (1353bp) protein (451aa)
LytTr DNA-binding region n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CTG5_PSEUX
LytTr DNA-binding protein
LytTr DNA-binding region {ECO:0000313|EMBL:AEA27390.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCN18_30_10_14_R1_P_scaffold_605_7
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4682..5758)
DNA (1077bp) protein (359aa)
pyrroloquinoline quinone biosynthesis protein PqqE n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE19C
coenzyme PQQ biosynthesis protein E
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCN18_30_10_14_R1_P_scaffold_605_8
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5751..6023)
DNA (273bp) protein (91aa)
Coenzyme PQQ synthesis D n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S4D6_GEOOG
coenzyme PQQ synthesis D
Coenzyme PQQ synthesis D {ECO:0000313|EMBL:ADB75126.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCN18_30_10_14_R1_P_scaffold_605_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6013..6708)
DNA (696bp) protein (232aa)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinoline quinone biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
pyrroloquinoline quinone biosynthesis protein PqqC n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE19E
pyrroloquinoline quinone biosynthesis protein PqqC
SCN18_30_10_14_R1_P_scaffold_605_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6705..7592)
DNA (888bp) protein (296aa)
Coenzyme PQQ synthesis protein B n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S4D4_GEOOG
pyrroloquinoline quinone biosynthesis protein PqqB
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCN18_30_10_14_R1_P_scaffold_605_11
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7814..9502)
DNA (1689bp) protein (563aa)
alcohol dehydrogenase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A0
PQQ-dependent dehydrogenase, methanol/ethanol family {ECO:0000313|EMBL:EXG82906.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PQQ-dependent dehydrogenase
SCN18_30_10_14_R1_P_scaffold_605_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9516..9977)
DNA (462bp) protein (154aa)
multicopper oxidase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A1
Uncharacterized protein {ECO:0000313|EMBL:EXG82905.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
SCN18_30_10_14_R1_P_scaffold_605_13
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10581..11339
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000366CB2F
SCN18_30_10_14_R1_P_scaffold_605_14
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11383..12147)
DNA (765bp) protein (255aa)
ribonucleotide reductase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A3
Putative ribonucleoside-diphosphate reductase (Beta chain) {ECO:0000313|EMBL:EHN12101.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
SCN18_30_10_14_R1_P_scaffold_605_15
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12160..12354)
DNA (195bp) protein (65aa)
rubredoxin n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A4
rubA; rubredoxin
Rubredoxin {ECO:0000256|RuleBase:RU003820}; TaxID=1165867 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus imtechensis RKJ300 = JCM 13270.;"
SCN18_30_10_14_R1_P_scaffold_605_16
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12557..12988
DNA (432bp) protein (144aa)
ATPase n=1 Tax=Amycolatopsis nigrescens RepID=UPI000363A9AC
ATPase {ECO:0000313|EMBL:EST25842.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
ATPase
SCN18_30_10_14_R1_P_scaffold_605_17
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12978..13322
DNA (345bp) protein (115aa)
ArsR family transcriptional regulator n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6K365_STRRC
ArsR family transcriptional regulator {ECO:0000313|EMBL:EST25841.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
ArsR family transcriptional regulator
SCN18_30_10_14_R1_P_scaffold_605_18
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13315..13584
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TC29_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EWC62333.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein
SCN18_30_10_14_R1_P_scaffold_605_19
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13581..14231
DNA (651bp) protein (217aa)
UPI0003CFE4A2 related cluster n=1 Tax=unknown RepID=UPI0003CFE4A2
Uncharacterized protein {ECO:0000313|EMBL:ESZ04893.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCN18_30_10_14_R1_P_scaffold_605_20
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14355..16457)
DNA (2103bp) protein (701aa)
Peptidase S9B dipeptidylpeptidase IV domain-containing protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN05_PSEUX
peptidase S9B dipeptidylpeptidase IV domain-containing protein
Peptidase S9B dipeptidylpeptidase IV domain-containing protein {ECO:0000313|EMBL:AEA26018.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCN18_30_10_14_R1_P_scaffold_605_21
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16525..17145
DNA (621bp) protein (207aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Frankia sp. CN3 RepID=G6HQ18_9ACTO
FKBP-type peptidylprolyl isomerase
SCN18_30_10_14_R1_P_scaffold_605_22
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17146..18321)
DNA (1176bp) protein (392aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN03_PSEUX
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:AEA26016.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCN18_30_10_14_R1_P_scaffold_605_23
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18901..19182
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00036B4647
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHB48912.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
SCN18_30_10_14_R1_P_scaffold_605_24
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19226..19861)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00036603CA
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:KEG41744.1}; TaxID=66897 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseorubens.;"
SCN18_30_10_14_R1_P_scaffold_605_25
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20252..20785)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002FE57CE
Carotenoid oxygenase {ECO:0000313|EMBL:ESZ86619.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
Lignostilbene-alpha,beta-dioxygenase-related enzymes
SCN18_30_10_14_R1_P_scaffold_605_26
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20854..21222
DNA (369bp) protein (123aa)
SCN18_30_10_14_R1_P_scaffold_605_27
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21219..21941)
DNA (723bp) protein (241aa)
Beta-lactamase domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN01_PSEUX
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:AEA26014.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCN18_30_10_14_R1_P_scaffold_605_28
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22015..23223
DNA (1209bp) protein (403aa)
ABC-type branched-chain amino acid transport systems, extracellular component n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX33_BLASD
Benzoate transport, extracellular ligand-binding receptor {ECO:0000313|EMBL:CEL20293.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
ABC-type branched-chain amino acid transport systems, extracellular component
SCN18_30_10_14_R1_P_scaffold_605_29
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23291..24148
DNA (858bp) protein (286aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX32_BLASD
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL20292.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
branched-chain amino acid ABC transporter permease
SCN18_30_10_14_R1_P_scaffold_605_30
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24145..25140
DNA (996bp) protein (332aa)
Amino acid/amide ABC transporter membrane component, HAAT family n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX31_BLASD
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL20291.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
Amino acid/amide ABC transporter membrane component, HAAT family
Displaying items 1-30 of 57 in total

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