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SCN18_30_10_14_R2_B_scaffold_1029

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1029_trna_2
unknown

Not on your lists

comp(534..606)
DNA (73bp)
transferRNA Ala
SCN18_30_10_14_R2_B_scaffold_1029_trna_1
unknown

Not on your lists

comp(625..698)
DNA (74bp)
transferRNA Ile
SCN18_30_10_14_R2_B_scaffold_1029_1
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

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1052..1933
DNA (882bp) protein (294aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Methylisocitrate lyase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCK4_SINAD
methylisocitrate lyase
SCN18_30_10_14_R2_B_scaffold_1029_2
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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2123..3088
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00037C4917
Delta-9 acyl-phospholipid desaturase
Delta-9 acyl-phospholipid desaturase {ECO:0000313|EMBL:ACU98205.1}; TaxID=471857 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
SCN18_30_10_14_R2_B_scaffold_1029_3
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3185..4636)
DNA (1452bp) protein (484aa)
sulfatase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746095
Uncharacterized protein {ECO:0000313|EMBL:EDY22070.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1029_4
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4674..7163)
DNA (2490bp) protein (830aa)
probable chromosome segregation protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017455B8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG67359.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1029_5
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7361..9049
DNA (1689bp) protein (563aa)
probable chemotaxis transducer n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C38B2
Uncharacterized protein {ECO:0000313|EMBL:KFN48344.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
methyl-accepting chemotaxis protein
SCN18_30_10_14_R2_B_scaffold_1029_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9074..9517
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030C3BF4
CheW protein
CheW protein {ECO:0000313|EMBL:AHZ69426.1}; TaxID=1147786 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii JR-1.;"
SCN18_30_10_14_R2_B_scaffold_1029_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9514..10728
DNA (1215bp) protein (405aa)
chemotaxis protein CheR (EC:2.1.1.80)
putative chemotaxis protein methyltransferase CheR n=2 Tax=Gemmata obscuriglobus RepID=UPI00016C38B5
MCP methyltransferase, CheR-type {ECO:0000313|EMBL:AAZ63009.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCN18_30_10_14_R2_B_scaffold_1029_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10725..11390
DNA (666bp) protein (222aa)
CheW purine-binding chemotaxis protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C38B6
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:AGA28991.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1029_9
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11387..14146
DNA (2760bp) protein (920aa)
CheA chemotaxis protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C38B7
chemotaxis protein histidine kinase-like protein
Chemotaxis protein histidine kinase-like protein {ECO:0000313|EMBL:AGA28990.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1029_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14228..15484)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B72
conserved exported hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM90191.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_30_10_14_R2_B_scaffold_1029_11
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15619..15936
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002FECCCC
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EMI19517.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
SCN18_30_10_14_R2_B_scaffold_1029_12
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15930..16409)
DNA (480bp) protein (160aa)
nickel responsive regulator n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3510
transcriptional regulator
Tax=RBG_13_Planctomycetes_63_9_curated
SCN18_30_10_14_R2_B_scaffold_1029_13
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16454..17008)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4446
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCN18_30_10_14_R2_B_scaffold_1029_14
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17073..18665)
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4D75
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCN18_30_10_14_R2_B_scaffold_1029_15
unknown

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comp(18830..19213)
DNA (384bp) protein (128aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1029_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19398..20294
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002EBC3CB
Uncharacterized protein {ECO:0000313|EMBL:EDY17205.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
isochorismatase hydrolase
SCN18_30_10_14_R2_B_scaffold_1029_17
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

20408..23764
DNA (3357bp) protein (1119aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFQ6_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL56501.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
membrane-bound dehydrogenase domain-containing protein
SCN18_30_10_14_R2_B_scaffold_1029_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23944..26067
DNA (2124bp) protein (708aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4907
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV62188.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_1029_19
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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comp(26230..26862)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003700681
Transposase {ECO:0000313|EMBL:KIJ79397.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
transposase and inactivated derivatives
SCN18_30_10_14_R2_B_scaffold_1029_20
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(26913..27377)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YAI2_THIV6
Transposase {ECO:0000313|EMBL:CDH45749.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1029_21
unknown

Not on your lists

27542..27661
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 23 items

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