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SCN18_30_10_14_R2_B_scaffold_3143

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3143_1
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(142..891)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F0E5BD
SCN18_30_10_14_R2_B_scaffold_3143_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(861..1301)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5535
SCN18_30_10_14_R2_B_scaffold_3143_3
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1385..3274)
DNA (1890bp) protein (630aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
1,4-alpha-glucan branching protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5533
alpha amylase
SCN18_30_10_14_R2_B_scaffold_3143_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3309..4226)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F4713A
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AFZ18339.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
SCN18_30_10_14_R2_B_scaffold_3143_5
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4311..4484)
DNA (174bp) protein (58aa)
membrane protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5385
hypothetical protein
Tax=GWF2_Lentisphaerae_57_35_curated
SCN18_30_10_14_R2_B_scaffold_3143_6
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4669..4884
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCK9_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL78496.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_30_10_14_R2_B_scaffold_3143_7
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5047..7953
DNA (2907bp) protein (969aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B8A
Phytoene desaturase {ECO:0000313|EMBL:EIE22688.1}; TaxID=574566 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa.;" source="Coccomyxa subellipsoidea C-169.;"
SCN18_30_10_14_R2_B_scaffold_3143_trna_1
unknown

Not on your lists

8045..8118
DNA (74bp)
transferRNA Asp
SCN18_30_10_14_R2_B_scaffold_3143_8
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8542..9726
DNA (1185bp) protein (395aa)
SCN18_30_10_14_R2_B_scaffold_3143_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9977..10396)
DNA (420bp) protein (140aa)
Similar to transcriptional regulator n=1 Tax=Rhodopirellula baltica (strain SH1) RepID=Q7UJ08_RHOBA
transcriptional regulator
Similar to transcriptional regulator {ECO:0000313|EMBL:CAD77452.1}; TaxID=243090 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica (strain SH1).;"
SCN18_30_10_14_R2_B_scaffold_3143_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10398..11267)
DNA (870bp) protein (290aa)
dnaB; replicative DNA helicase (EC:3.6.1.-)
Probable replicative DNA helicase {ECO:0000313|EMBL:CAD77453.1}; EC=3.6.1.- {ECO:0000313|EMBL:CAD77453.1};; TaxID=243090 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica (strain SH1).;"
Probable replicative DNA helicase n=1 Tax=Rhodopirellula baltica (strain SH1) RepID=Q7UJ07_RHOBA
SCN18_30_10_14_R2_B_scaffold_3143_11
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11264..12376)
DNA (1113bp) protein (371aa)
DNA primase, small subunit n=1 Tax=Rhodopirellula baltica SWK14 RepID=L7CAJ3_RHOBT
hypothetical protein
DNA primase, small subunit {ECO:0000313|EMBL:ELP30845.1}; TaxID=993516 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica SWK14.;"
SCN18_30_10_14_R2_B_scaffold_3143_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12373..12879)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F03836
SCN18_30_10_14_R2_B_scaffold_3143_13
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13088..13396)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBA9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26527.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3143_14
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13721..15292)
DNA (1572bp) protein (524aa)
SCN18_30_10_14_R2_B_scaffold_3143_15
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15578..16090)
DNA (513bp) protein (171aa)
SCN18_30_10_14_R2_B_scaffold_3143_16
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16087..16305)
DNA (219bp) protein (73aa)
SCN18_30_10_14_R2_B_scaffold_3143_17
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16305..16706)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C464D
Phage protein {ECO:0000313|EMBL:EGO62587.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
SCN18_30_10_14_R2_B_scaffold_3143_18
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17010..17270
DNA (261bp) protein (87aa)
Bpu10I restriction endonuclease family protein n=2 Tax=Escherichia coli RepID=H5FHM2_ECOLX
Bpu10I restriction endonuclease family protein {ECO:0000313|EMBL:KDU30739.1}; TaxID=1444252 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C2.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3143_19
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17343..17615
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI000373BBB0
Uncharacterized protein {ECO:0000313|EMBL:EAW36218.1}; TaxID=313612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3143_20
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17642..18019
DNA (378bp) protein (126aa)
IS1 transposase n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8N9F7_9CYAN
Transposase {ECO:0000313|EMBL:KIF14450.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
IS1 transposase
SCN18_30_10_14_R2_B_scaffold_3143_21
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18050..18277
DNA (228bp) protein (76aa)
SCN18_30_10_14_R2_B_scaffold_3143_22
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18394..18852
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00037CBCCE
Transposase {ECO:0000313|EMBL:CDH45749.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3143_23
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18903..19307
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RTJ6_9RHOB
Transposase {ECO:0000313|EMBL:KHG42960.1}; TaxID=1532906 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.;" source="Aphanizomenon flos-aquae 2012/KM1/D3.;"
hypothetical protein
Displaying 24 items

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