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SCN18_30_10_14_R2_B_scaffold_3300

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3300_1
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..529
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B1P6_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS39680.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCN18_30_10_14_R2_B_scaffold_3300_2
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

531..1283
DNA (753bp) protein (251aa)
Putative membrane protein n=1 Tax=Rhodopirellula europaea 6C RepID=M2B3M8_9PLAN
Putative membrane protein {ECO:0000313|EMBL:EMB16368.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3300_3
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1280..2041
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAM0_METSZ
Uncharacterized protein {ECO:0000313|EMBL:CCD32025.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3300_4
unknown

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2153..2509
DNA (357bp) protein (119aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3300_5
unknown

Not on your lists

2576..2845
DNA (270bp) protein (90aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3300_6
unknown

Not on your lists

2892..3236
DNA (345bp) protein (115aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3300_7
unknown

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comp(3243..3707)
DNA (465bp) protein (155aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3300_8
SCNpilot_P_inoc_Microbacterium_67_17, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

3798..4394
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RXA5_SYNP3
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bdellovibrionales_40_15_curated
SCN18_30_10_14_R2_B_scaffold_3300_9
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4624..5409)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Rhodopirellula europaea 6C RepID=M2B3N9_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EMB16378.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
SCN18_30_10_14_R2_B_scaffold_3300_10
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5769..7235)
DNA (1467bp) protein (489aa)
UPI0003CF824D related cluster n=1 Tax=unknown RepID=UPI0003CF824D
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:ESY73858.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UBA/ThiF-type NAD/FAD binding fold containing protein
SCN18_30_10_14_R2_B_scaffold_3300_11
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7238..7759)
DNA (522bp) protein (174aa)
UPI0003CED7C3 related cluster n=1 Tax=unknown RepID=UPI0003CED7C3
Uncharacterized protein {ECO:0000313|EMBL:EXS68026.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3300_12
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7713..8189)
DNA (477bp) protein (159aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC58421.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Uncharacterized protein id=2106656 bin=GWB2_Chloroflexi_54_36 species=Nitratireductor aquibiodomus genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3300_13
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8191..8682)
DNA (492bp) protein (164aa)
UPI0003CE9C07 related cluster n=1 Tax=unknown RepID=UPI0003CE9C07
Uncharacterized protein {ECO:0000313|EMBL:KJC58422.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3300_14
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8804..9580)
DNA (777bp) protein (259aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
UPI0003CE91A2 related cluster n=1 Tax=unknown RepID=UPI0003CE91A2
UvrD/REP helicase
SCN18_30_10_14_R2_B_scaffold_3300_15
CN-SCN_Rhodanobacter_45x, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9585..12089)
DNA (2505bp) protein (835aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
UPI0003CF6422 related cluster n=1 Tax=unknown RepID=UPI0003CF6422
UvrD/REP helicase
SCN18_30_10_14_R2_B_scaffold_3300_16
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12092..12703)
DNA (612bp) protein (204aa)
UPI0003CF03C6 related cluster n=1 Tax=unknown RepID=UPI0003CF03C6
Uncharacterized protein {ECO:0000313|EMBL:KJC58424.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCN18_30_10_14_R2_B_scaffold_3300_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12700..13374)
DNA (675bp) protein (225aa)
UPI0003CECD31 related cluster n=1 Tax=unknown RepID=UPI0003CECD31
Uncharacterized protein {ECO:0000313|EMBL:KJC58425.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCN18_30_10_14_R2_B_scaffold_3300_18
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13655..14635)
DNA (981bp) protein (327aa)
Site-specific recombinase XerD n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQH8_SINAD
site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:AGA31704.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3300_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14830..16221
DNA (1392bp) protein (464aa)
UPI0003CFB05A related cluster n=1 Tax=unknown RepID=UPI0003CFB05A
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
SCN18_30_10_14_R2_B_scaffold_3300_20
unknown

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comp(16291..16404)
DNA (114bp) protein (38aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3300_21
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

Not on your lists

comp(16465..16746)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Paenibacillus polymyxa RepID=UPI000360B101
plasmid-like protein
Plasmid related protein {ECO:0000313|EMBL:ABJ88529.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_30_10_14_R2_B_scaffold_3300_22
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16763..17062)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodopirellula europaea SH398 RepID=M5SE35_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:KKK84749.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3300_23
unknown

Not on your lists

comp(17290..17610)
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying 23 items

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