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SCN18_30_10_14_R2_B_scaffold_2550

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2550_1
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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3..476
DNA (474bp) protein (158aa)
Ribosome maturation factor RimP n=1 Tax=Acetobacter pomorum DM001 RepID=F1YQ71_9PROT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1231342 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter orleanensis JCM 7639.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2550_2
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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502..2049
DNA (1548bp) protein (516aa)
N utilization substance protein A n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPG0_GRABC
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
N utilization substance protein A
SCN18_30_10_14_R2_B_scaffold_2550_3
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1994..2758
DNA (765bp) protein (255aa)
Hypothetical cytosolic protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPG1_GRABC
Putative cytosolic protein
Putative cytosolic protein {ECO:0000313|EMBL:AHJ64309.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCN18_30_10_14_R2_B_scaffold_2550_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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2755..3201
DNA (447bp) protein (149aa)
Translation initiation factor IF-2 n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=IF2_GRABC
Bacterial Protein Translation Initiation Factor 2 (IF-2)
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCN18_30_10_14_R2_B_scaffold_2550_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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3381..5423
DNA (2043bp) protein (681aa)
Translation initiation factor IF-2 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=IF2_GLUDA
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
infB; translation initiation factor IF-2
SCN18_30_10_14_R2_B_scaffold_2550_6
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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5434..5832
DNA (399bp) protein (133aa)
Ribosome-binding factor A n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I097_GLUXN
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=634177 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG; 1693 / Kondo 51) (Gluconacetobacter medellinensis).;"
SCN18_30_10_14_R2_B_scaffold_2550_7
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5829..6158
DNA (330bp) protein (110aa)
DNA polymerase beta domain protein region n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MSS2_9SPHN
DNA polymerase beta domain protein region {ECO:0000313|EMBL:CCW18468.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Putative nucleotidyltransferase
SCN18_30_10_14_R2_B_scaffold_2550_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6148..6519
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003620571
Uncharacterized protein {ECO:0000313|EMBL:CCW18467.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2550_9
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6525..7445
DNA (921bp) protein (307aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
TRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPK1_GRABC
SCN18_30_10_14_R2_B_scaffold_2550_10
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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7503..7772
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FCBFE0
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
30S ribosomal protein S15
SCN18_30_10_14_R2_B_scaffold_2550_11
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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8105..10318
DNA (2214bp) protein (738aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
polynucleotide phosphorylase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D30A68
pnp; polynucleotide phosphorylase
SCN18_30_10_14_R2_B_scaffold_2550_12
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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10417..11829
DNA (1413bp) protein (471aa)
2-nitropropane dioxygenase-like dioxygenase n=3 Tax=Acidiphilium RepID=A5G0I9_ACICJ
2-nitropropane dioxygenase {ECO:0000313|EMBL:GAN75959.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2-nitropropane dioxygenase
SCN18_30_10_14_R2_B_scaffold_2550_13
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11959..12534
DNA (576bp) protein (192aa)
PadR family transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2TDH0_RHORU
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ABC24235.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCN18_30_10_14_R2_B_scaffold_2550_14
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12547..12837
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I1E6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN12296.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2550_15
SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16, SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16, SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16, SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16, Bacteroidetes, Bacteria

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12851..14101
DNA (1251bp) protein (417aa)
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCN18_30_10_14_R2_B_scaffold_2550_16
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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14166..15155
DNA (990bp) protein (330aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVZ2_GRABC
SCN18_30_10_14_R2_B_scaffold_2550_17
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15099..17600)
DNA (2502bp) protein (834aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A8108
outer membrane autotransporter barrel
Uncharacterized protein {ECO:0000313|EMBL:BAO18977.1}; TaxID=326454 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. M701.;"
Displaying 17 items

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