ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1281

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1281_1
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..517
DNA (516bp) protein (172aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JY5_RHOP5
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABJ07749.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_30_10_14_R2_B_scaffold_1281_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

539..2116
DNA (1578bp) protein (526aa)
Putative AMP-dependent synthetase and ligase id=3198385 bin=GWF2_Methylomirabilis_70_14 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-binding enzyme family protein
Tax=GWA2_Rokubacteria_70_23_curated
SCN18_30_10_14_R2_B_scaffold_1281_3
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2104..3096)
DNA (993bp) protein (331aa)
luciferase family protein id=14625861 bin=bin7_NC10_sister species=Frankia sp. EUN1f genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
luciferase family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
SCN18_30_10_14_R2_B_scaffold_1281_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3093..4148)
DNA (1056bp) protein (352aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX06461.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Putative F420-dependent oxidoreductase, luciferase-like protein id=3424666 bin=GWC2_Methylomirabilis_70_16 species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase-like monooxygenase
SCN18_30_10_14_R2_B_scaffold_1281_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4158..5033)
DNA (876bp) protein (292aa)
Taurine dioxygenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUN5_PARL1
taurine dioxygenase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCN18_30_10_14_R2_B_scaffold_1281_6
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5048..6112)
DNA (1065bp) protein (355aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
2-dehydropantoate 2-reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IQ09_9BRAD
putative 2-dehydropantoate 2-reductase
SCN18_30_10_14_R2_B_scaffold_1281_7
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6187..6603)
DNA (417bp) protein (139aa)
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1281_8
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6696..7703
DNA (1008bp) protein (336aa)
2-alkenal reductase n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0J6W5_9PSED
zinc-containing alcohol dehydrogenase superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCN18_30_10_14_R2_B_scaffold_1281_9
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7709..8113)
DNA (405bp) protein (135aa)
Predicted aromatic ring hydroxylating dioxygenase beta subunit n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q140L1_BURXL
ring hydroxylating beta subunit
Predicted aromatic ring hydroxylating dioxygenase beta subunit {ECO:0000313|EMBL:ABE30228.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCN18_30_10_14_R2_B_scaffold_1281_10
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8409..9335
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036D65A6
polyphosphate kinase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCN18_30_10_14_R2_B_scaffold_1281_11
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9401..10087
DNA (687bp) protein (229aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Desulfovibrio sp. X2 RepID=S7TU57_9DELT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EPR40250.1}; Flags: Precursor;; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
short-chain dehydrogenase/reductase SDR
SCN18_30_10_14_R2_B_scaffold_1281_12
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(10098..11681)
DNA (1584bp) protein (528aa)
ABC transporter substrate-binding protein n=1 Tax=Frankia sp. BCU110501 RepID=UPI000373929E
extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ABW11942.1}; Flags: Precursor;; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCN18_30_10_14_R2_B_scaffold_1281_13
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11834..12547)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000368DB8C
Serine/threonine protein phosphatase {ECO:0000313|EMBL:GAN78061.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
serine/threonine protein phosphatase
SCN18_30_10_14_R2_B_scaffold_1281_14
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12615..14150
DNA (1536bp) protein (512aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00036F1598
Na+/H+ antiporter {ECO:0000313|EMBL:EKS36990.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nhaK; sodium, potassium, lithium and rubidium/H(+) antiporter
SCN18_30_10_14_R2_B_scaffold_1281_15
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14197..16542)
DNA (2346bp) protein (782aa)
ATP-dependent clp protease ATP-binding subunit clpA n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BRA3_GRABC
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:GAN78114.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ATP-dependent clp protease ATP-binding subunit clpA
SCN18_30_10_14_R2_B_scaffold_1281_16
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16682..17011)
DNA (330bp) protein (110aa)
ATP-dependent Clp protease ClpS n=1 Tax=Elioraea tepidiphila RepID=UPI000360018E
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
clpS; ATP-dependent Clp protease adaptor protein ClpS,putative
SCN18_30_10_14_R2_B_scaffold_1281_17
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17251..17796)
DNA (546bp) protein (182aa)
Phasin family protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G2E7_ACICJ
Transcriptional regulator polyhydroxyalkanoate biosynthesis {ECO:0000313|EMBL:GAN78112.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
phasin family protein
SCN18_30_10_14_R2_B_scaffold_1281_18
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18117..19373
DNA (1257bp) protein (419aa)
D-alanyl-D-alanine serine-type carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine serine-type carboxypeptidase {ECO:0000313|EMBL:ABI62549.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ABI62549.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
D-alanyl-D-alanine serine-type carboxypeptidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BRK3_GRABC
SCN18_30_10_14_R2_B_scaffold_1281_19
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19460..20020
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TXV6_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDP62877.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCN18_30_10_14_R2_B_scaffold_1281_20
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20100..21500
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000378A1E1
Aminotransferase {ECO:0000313|EMBL:GAN76545.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
class III aminotransferase
SCN18_30_10_14_R2_B_scaffold_1281_21
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21594..22556)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037599F2
Mg2 transporter protein CorA family protein
CorA protein {ECO:0000313|EMBL:BAQ48843.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Displaying 21 items

View Taxonomy