ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1641

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1641_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..256)
DNA (255bp) protein (85aa)
Transposase family protein n=4 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C467_RHILT
transposase IS4
Transposase family protein {ECO:0000313|EMBL:EJC73710.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCN18_30_10_14_R2_B_scaffold_1641_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(441..839)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0S3_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:KAI94538.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1641_3
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(908..1627)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00036D7853
Uncharacterized protein {ECO:0000313|EMBL:KGM35444.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1641_4
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1701..2666)
DNA (966bp) protein (322aa)
Transcription regulator transcription regulator protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V5CBR7_RALSL
putative LysR-family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R2_B_scaffold_1641_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2818..3414
DNA (597bp) protein (199aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJX4_METNO
Uncharacterized protein {ECO:0000313|EMBL:ETW96301.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCN18_30_10_14_R2_B_scaffold_1641_6
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3425..3811
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TT78_9BRAD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R2_B_scaffold_1641_7
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3827..4630
DNA (804bp) protein (268aa)
2-oxo-hept-3-ene-1,7-dioate hydratase n=1 Tax=Enterococcus gallinarum EGD-AAK12 RepID=U1D748_ENTGA
2-oxo-hepta-3-ene-1,7-dioate hydratase
2-oxo-hept-3-ene-1,7-dioate hydratase {ECO:0000313|EMBL:ERE49711.1}; TaxID=1357296 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus gallinarum EGD-AAK12.;"
SCN18_30_10_14_R2_B_scaffold_1641_8
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4676..5884
DNA (1209bp) protein (403aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003734581
branched-chain amino acid ABC transporter substrate-binding protein
Tax=RBG_16_Gamma2_60_9_curated
SCN18_30_10_14_R2_B_scaffold_1641_9
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5903..8227
DNA (2325bp) protein (775aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003670E63
coxL1; carbon-monoxide dehydrogenase large subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R2_B_scaffold_1641_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8224..9711
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003679CBD
4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit
Uncharacterized protein {ECO:0000313|EMBL:ETW99871.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCN18_30_10_14_R2_B_scaffold_1641_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9721..10611
DNA (891bp) protein (297aa)
Branched-chain amino acid ABC-type transport system, permease components id=2972524 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein
Tax=GWC2_Rokubacteria_70_16_curated
SCN18_30_10_14_R2_B_scaffold_1641_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10614..11579
DNA (966bp) protein (322aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJP3_PSEUX
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCN18_30_10_14_R2_B_scaffold_1641_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11576..12319
DNA (744bp) protein (248aa)
ABC transporter n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003146421
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACA19933.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN18_30_10_14_R2_B_scaffold_1641_14
SCN_Clostridium_9x, SCN_Clostridium_9x, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12316..13023
DNA (708bp) protein (236aa)
ABC-type branched-chain amino acid transport systems, ATPase component id=2644385 bin=GWF2_Methylomirabilis_70_14 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid ABC transporter ATPase
Tax=GWA2_Rokubacteria_70_23_curated
SCN18_30_10_14_R2_B_scaffold_1641_15
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13175..14386
DNA (1212bp) protein (404aa)
Extracellular ligand-binding receptor n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJN5_PSEUX
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCN18_30_10_14_R2_B_scaffold_1641_16
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14460..15215
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003618470
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 {ECO:0000313|EMBL:CEJ10994.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short chain dehydrogenase family protein 65
SCN18_30_10_14_R2_B_scaffold_1641_17
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15234..16445
DNA (1212bp) protein (404aa)
(S)-mandelate dehydrogenase n=1 Tax=Marinobacter sp. BSs20148 RepID=M1FBA0_9ALTE
L-lactate dehydrogenase {ECO:0000313|EMBL:ETR78167.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
mdlB; (S)-mandelate dehydrogenase
SCN18_30_10_14_R2_B_scaffold_1641_18
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16601..17149
DNA (549bp) protein (183aa)
Glutamine synthetase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HH27_9BRAD
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ETR78109.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1641_19
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17162..18253
DNA (1092bp) protein (364aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Alanine dehydrogenase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWM5_9PROT
alanine dehydrogenase
SCN18_30_10_14_R2_B_scaffold_1641_20
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

18392..19207
DNA (816bp) protein (272aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Acidiphilium sp. PM RepID=F7S9X3_9PROT
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:EGO94050.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
putative transposase for insertion sequence element
Displaying 20 items

View Taxonomy