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SCN18_30_10_14_R2_B_scaffold_644

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_644_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..650)
DNA (648bp) protein (216aa)
Formyl-CoA:oxalate CoA-transferase {ECO:0000256|HAMAP-Rule:MF_00742}; Short=FCOCT {ECO:0000256|HAMAP-Rule:MF_00742};; EC=2.8.3.16 {ECO:0000256|HAMAP-Rule:MF_00742};; Formyl-coenzyme A transferase {ECO:0000256|HAMAP-Rule:MF_00742}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
Formyl-coenzyme A transferase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z6Q0_9BRAD
putative formyl-CoA transferase
SCN18_30_10_14_R2_B_scaffold_644_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(737..2476)
DNA (1740bp) protein (580aa)
oxalyl-CoA decarboxylase (EC:4.1.1.8)
Oxalyl-CoA decarboxylase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PC61_9BRAD
Oxalyl-CoA decarboxylase {ECO:0000313|EMBL:EKS35928.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCN18_30_10_14_R2_B_scaffold_644_3
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2528..3253)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAS6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36700.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GntR family transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_644_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3486..4373
DNA (888bp) protein (296aa)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5C3_9BRAD
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EKS35934.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
tartronate semialdehyde reductase
SCN18_30_10_14_R2_B_scaffold_644_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4523..6868)
DNA (2346bp) protein (782aa)
RNA-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002F66C16
Transcription accessory protein {ECO:0000313|EMBL:EGP08304.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
RNA binding S1
SCN18_30_10_14_R2_B_scaffold_644_6
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6997..7752)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PVV3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42503.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_644_7
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7800..8543)
DNA (744bp) protein (248aa)
Branched-chain amino acid transport ATP-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKG7_9BRAD
Branched-chain amino acid transport ATP-binding protein {ECO:0000313|EMBL:EGP08336.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter
SCN18_30_10_14_R2_B_scaffold_644_8
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8536..9285)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQA2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41705.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter
SCN18_30_10_14_R2_B_scaffold_644_9
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9278..10213)
DNA (936bp) protein (312aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI0002E0C95A
Uncharacterized protein {ECO:0000313|EMBL:EKS41704.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator
SCN18_30_10_14_R2_B_scaffold_644_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10210..11076)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTM1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41703.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator
SCN18_30_10_14_R2_B_scaffold_644_11
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11111..12322)
DNA (1212bp) protein (404aa)
Putative branched-chain amino acid transporter substrate-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKG3_9BRAD
Putative branched-chain amino acid transporter substrate-binding protein {ECO:0000313|EMBL:EGP08332.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
extracellular ligand-binding receptor
SCN18_30_10_14_R2_B_scaffold_644_12
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12480..13382
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJI2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41701.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_644_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13407..14582)
DNA (1176bp) protein (392aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ackA; acetate kinase (EC:2.7.2.1)
PREDICTED: probable acetate kinase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13D94
SCN18_30_10_14_R2_B_scaffold_644_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14700..16601)
DNA (1902bp) protein (634aa)
Poly-beta-hydroxybutyrate polymerase domain protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4W1_POLGS
poly-beta-hydroxybutyrate polymerase domain protein
Poly-beta-hydroxybutyrate polymerase domain protein {ECO:0000313|EMBL:ADZ69053.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_30_10_14_R2_B_scaffold_644_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16861..17442)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DC096D
Uncharacterized protein {ECO:0000313|EMBL:CCE09478.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_644_16
unknown

Not on your lists

comp(17453..17635)
DNA (183bp) protein (61aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_644_17
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17635..17979)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TSP1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE09479.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_644_18
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17990..18814)
DNA (825bp) protein (275aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
peptidyl-prolyl cis-trans isomerase n=1 Tax=Afipia birgiae RepID=UPI0002E5E336
PpiC-type peptidyl-prolyl cis-trans isomerase
SCN18_30_10_14_R2_B_scaffold_644_19
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18832..19551)
DNA (720bp) protein (240aa)
Nitrate reductase 1, gamma (Cytochrome b(NR)) subunit {ECO:0000313|EMBL:CCE09481.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CCE09481.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
narI; respiratory nitrate reductase gamma chain NarI (EC:1.7.99.4)
nitrate reductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031F48DF
SCN18_30_10_14_R2_B_scaffold_644_20
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19562..20272)
DNA (711bp) protein (237aa)
Molybdenum-cofactor-assembly chaperone subunit (Delta subunit) of nitrate reductase 1 {ECO:0000313|EMBL:CCE09482.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CCE09482.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FF0296
narJ; nitrate reductase molybdenum cofactor assembly chaperone
SCN18_30_10_14_R2_B_scaffold_644_21
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20272..21792)
DNA (1521bp) protein (507aa)
narH; respiratory nitrate reductase beta chain NarH (EC:1.7.99.4)
nitrate reductase A subunit beta n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DC2734
Respiratory nitrate reductase 2 beta chain {ECO:0000313|EMBL:EKS30992.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCN18_30_10_14_R2_B_scaffold_644_22
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21789..25535)
DNA (3747bp) protein (1249aa)
nitrate reductase subunit alpha (EC:1.7.99.4)
Respiratory nitrate reductase alpha chain NarG {ECO:0000313|EMBL:AEI07607.1}; EC=1.7.99.4 {ECO:0000313|EMBL:AEI07607.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
nitrate reductase A subunit alpha n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037E857F
SCN18_30_10_14_R2_B_scaffold_644_23
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25552..28296)
DNA (2745bp) protein (915aa)
MFS transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E68D5A
Nitrite extrusion protein {ECO:0000313|EMBL:CCE04617.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
narK; nitrite extrusion protein NarK
SCN18_30_10_14_R2_B_scaffold_644_24
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28509..29207
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRB5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30989.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Crp family transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_644_25
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29227..30423)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU64_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31000.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NnrS
SCN18_30_10_14_R2_B_scaffold_644_26
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30955..32043
DNA (1089bp) protein (363aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
rfbB; dTDP-glucose 4,6-dehydratase RfbB (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V220_9BRAD
SCN18_30_10_14_R2_B_scaffold_644_27
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32040..32963
DNA (924bp) protein (308aa)
rfbD; dTDP-4-dehydrorhamnose reductase RfbD (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JCW7_OLICO
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:CEG09873.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCN18_30_10_14_R2_B_scaffold_644_28
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32973..33869
DNA (897bp) protein (299aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rfbA; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V217_9BRAD
SCN18_30_10_14_R2_B_scaffold_644_29
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33866..34411
DNA (546bp) protein (182aa)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EFI53746.1}; EC=5.1.3.13 {ECO:0000313|EMBL:EFI53746.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V216_9BRAD
SCN18_30_10_14_R2_B_scaffold_644_30
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34463..35164)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D8FBAB
Carbonic anhydrase {ECO:0000313|EMBL:KFL28036.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
carbonic anhydrase
Displaying items 1-30 of 34 in total

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