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SCN18_30_10_14_R2_B_scaffold_2949

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2949_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(30..1085)
DNA (1056bp) protein (352aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EYR78610.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein id=3348585 bin=GWF2_Methylomirabilis_70_14 species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tauA; Taurine-binding periplasmic protein
SCN18_30_10_14_R2_B_scaffold_2949_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1147..1917)
DNA (771bp) protein (257aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHF5_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system permease component {ECO:0000313|EMBL:EYR78609.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitrate/sulfonate/bicarbonate ABC transporter permease
SCN18_30_10_14_R2_B_scaffold_2949_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1914..2705)
DNA (792bp) protein (264aa)
Putative aliphatic sulfonates transport permease protein SsuC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXH0_9RHIZ
Putative aliphatic sulfonates transport permease protein SsuC {ECO:0000313|EMBL:EYR78608.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
taurine ABC transporter permease
SCN18_30_10_14_R2_B_scaffold_2949_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2702..3499)
DNA (798bp) protein (266aa)
ABC transporter-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6D2_9RHIZ
ABC transporter-like protein {ECO:0000313|EMBL:EYR78607.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
SCN18_30_10_14_R2_B_scaffold_2949_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3821..4873
DNA (1053bp) protein (351aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1U2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR78606.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_2949_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4964..6520
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV12_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78605.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2949_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6561..7385)
DNA (825bp) protein (275aa)
DMT transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B69C2A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD07949.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_30_10_14_R2_B_scaffold_2949_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7686..8531
DNA (846bp) protein (282aa)
MaoC-like protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0V4_9PROT
MaoC-like protein {ECO:0000313|EMBL:EHM00836.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
acyl dehydratase
SCN18_30_10_14_R2_B_scaffold_2949_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8553..10901
DNA (2349bp) protein (783aa)
Biotin sulfoxide reductase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0V3_9PROT
Biotin sulfoxide reductase {ECO:0000313|EMBL:EHM00835.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
torG; trimethylamine-N-oxide reductase (cytochrome c)
SCN18_30_10_14_R2_B_scaffold_2949_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10898..11584
DNA (687bp) protein (229aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0V0_9PROT
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EHM00832.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
short chain dehydrogenase
SCN18_30_10_14_R2_B_scaffold_2949_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11596..12531
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0U9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHM00831.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2949_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12642..14240
DNA (1599bp) protein (533aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0U1_9PROT
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EHM00823.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
ABC transporter substrate-binding protein
SCN18_30_10_14_R2_B_scaffold_2949_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14377..15369)
DNA (993bp) protein (331aa)
Oligopeptide/dipeptide transporter domain family protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WGC5_9SYNE
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:KIL97150.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
dppF; dipeptide ABC transporter ATP-binding protein
SCN18_30_10_14_R2_B_scaffold_2949_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15366..16376)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002E50802
oppD; oligopeptide ABC transporter
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R2_B_scaffold_2949_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16444..16731)
DNA (288bp) protein (96aa)
Transposase IS4 family protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZEF5_9ZZZZ
Marine sediment metagenome DNA, contig: S01H1_S16293 {ECO:0000313|EMBL:GAG27745.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase IS4 family protein
Displaying 15 items

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