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SCN18_30_10_14_R2_P_scaffold_7

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Displaying items 1-30 of 1401 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_P_scaffold_7_trna_1
unknown

Not on your lists

742..822
DNA (81bp)
transferRNA Met
SCN18_30_10_14_R2_P_scaffold_7_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(896..2095)
DNA (1200bp) protein (400aa)
Histidine phosphatase superfamily (Branch 2) n=1 Tax=uncultured organism RepID=T1W5G8_9ZZZZ
Histidine phosphatase superfamily (Branch 2) {ECO:0000313|EMBL:AGU10237.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
glucose-1-phosphatase
SCN18_30_10_14_R2_P_scaffold_7_2
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2097..3203)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W7A9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU10414.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCN18_30_10_14_R2_P_scaffold_7_3
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3203..5881)
DNA (2679bp) protein (893aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas elodea RepID=UPI0002630AEB
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAM00447.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
TonB-dependent receptor
SCN18_30_10_14_R2_P_scaffold_7_4
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6133..7332)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289889B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05936.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_30_10_14_R2_P_scaffold_7_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7342..8601)
DNA (1260bp) protein (420aa)
iron transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC05
Mn2+/Fe2 transporter, NRAMP family {ECO:0000313|EMBL:ENZ82949.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
iron transporter
SCN18_30_10_14_R2_P_scaffold_7_6
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8886..9755
DNA (870bp) protein (290aa)
oxidoreductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B42F69
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12809.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
oxidoreductase
SCN18_30_10_14_R2_P_scaffold_7_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9841..10443
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A14DB
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13057.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TetR family transcriptional regulator
SCN18_30_10_14_R2_P_scaffold_7_8
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10765..11175
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WSP9_9SPHN
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13056.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCN18_30_10_14_R2_P_scaffold_7_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11251..11922)
DNA (672bp) protein (224aa)
Bacterial regulatory protein, tetR family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QIS9_9CAUL
Bacterial regulatory protein, tetR family protein {ECO:0000313|EMBL:EGF91838.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
transcriptional regulator, TetR family
SCN18_30_10_14_R2_P_scaffold_7_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12001..13410
DNA (1410bp) protein (470aa)
MFS transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6C5
major facilitator superfamily protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_30_10_14_R2_P_scaffold_7_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13407..15041
DNA (1635bp) protein (545aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
carboxylesterase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA2
carboxylesterase
SCN18_30_10_14_R2_P_scaffold_7_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15095..17362)
DNA (2268bp) protein (756aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05305.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_30_10_14_R2_P_scaffold_7_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17575..18633)
DNA (1059bp) protein (353aa)
glycosyl transferase family 2 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002898B01
Family 2 glycosyl transferase {ECO:0000313|EMBL:EZP51665.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
glycosyl transferase family 2
SCN18_30_10_14_R2_P_scaffold_7_14
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18630..21179)
DNA (2550bp) protein (850aa)
aminotransferase DegT n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C87
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EZP51664.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
aminotransferase DegT
SCN18_30_10_14_R2_P_scaffold_7_15
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21242..21592
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T159_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO39606.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCN18_30_10_14_R2_P_scaffold_7_16
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21691..22761
DNA (1071bp) protein (357aa)
Poly(3-hydroxyalkanoate) synthetase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WJ94_9BRAD
Putative polyhydroxyalkanoate synthase {ECO:0000313|EMBL:GAO39607.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCN18_30_10_14_R2_P_scaffold_7_17
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22758..23291
DNA (534bp) protein (178aa)
acetyltransferase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002889FB2
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EZP57335.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
acetyltransferase
SCN18_30_10_14_R2_P_scaffold_7_18
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23347..24153
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PU72_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO39609.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
alpha/beta hydrolase domain-containing protein
SCN18_30_10_14_R2_P_scaffold_7_19
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24321..24767)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003813058
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05997.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_30_10_14_R2_P_scaffold_7_20
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24767..26293)
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NCJ9_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:GAO40314.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCN18_30_10_14_R2_P_scaffold_7_21
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26506..28377)
DNA (1872bp) protein (624aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E72B4D
glycosyl transferase family 1
Glycosyl transferase family 1 {ECO:0000313|EMBL:AJP72250.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_30_10_14_R2_P_scaffold_7_22
unknown

Not on your lists

comp(28438..28680)
DNA (243bp) protein (81aa)

This feature has no annotations

SCN18_30_10_14_R2_P_scaffold_7_23
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(28746..29126)
DNA (381bp) protein (127aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDD62
response regulator receiver domain-containing protein
Response regulator receiver {ECO:0000313|EMBL:EHJ04590.1}; TaxID=1094979 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter manganoxydans MnI7-9.;"
SCN18_30_10_14_R2_P_scaffold_7_24
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29123..29644)
DNA (522bp) protein (174aa)
DNA repair protein RadC n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3DE30
Uncharacterized protein {ECO:0000313|EMBL:KKC26170.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
DNA repair protein RadC
SCN18_30_10_14_R2_P_scaffold_7_25
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29698..30180)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2CNY5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK78634.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCN18_30_10_14_R2_P_scaffold_7_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30221..30589)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DBT1_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74950.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCN18_30_10_14_R2_P_scaffold_7_27
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30644..31207)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CS14_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74949.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
regulatory protein LuxR
SCN18_30_10_14_R2_P_scaffold_7_28
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31575..32966
DNA (1392bp) protein (464aa)
sugar transporter n=2 Tax=Sphingomonas melonis RepID=UPI00037232C3
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30228.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sugar transporter
SCN18_30_10_14_R2_P_scaffold_7_29
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32906..35077
DNA (2172bp) protein (724aa)
Glycoside hydrolase, clan GH-D n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G755_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05271.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Displaying items 1-30 of 1401 in total

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