ggKbase home page

SCN18_30_10_14_R3_B_scaffold_1195

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1195_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..157)
DNA (156bp) protein (52aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
2'-5' RNA ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1K6_9BRAD
2',5' RNA ligase
SCN18_30_10_14_R3_B_scaffold_1195_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(296..931)
DNA (636bp) protein (212aa)
acyl-CoA thioesterase n=1 Tax=Afipia birgiae RepID=UPI0002D2ECF4
G-D-S-L lipolytic protein
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:ABE37770.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_30_10_14_R3_B_scaffold_1195_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

945..1784
DNA (840bp) protein (280aa)
ABC transporter ATP-binding protein YvcR n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGL6_9BRAD
ABC transporter ATP-binding protein YvcR {ECO:0000313|EMBL:EGP09661.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter-like protein
SCN18_30_10_14_R3_B_scaffold_1195_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1781..4339
DNA (2559bp) protein (853aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NW96_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34617.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1195_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4548..5342
DNA (795bp) protein (265aa)
Membrane protein n=2 Tax=Bradyrhizobiaceae RepID=F7QGL8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33802.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
inhibitor of apoptosis-promoting Bax1-like protein
SCN18_30_10_14_R3_B_scaffold_1195_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5574..6104
DNA (531bp) protein (177aa)
phosphinothricin N-acetyltransferase (EC:2.3.1.-)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNH4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29969.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCN18_30_10_14_R3_B_scaffold_1195_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6135..6482)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAW8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50045.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1195_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7079..7906)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLH2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29971.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1195_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8033..10753)
DNA (2721bp) protein (907aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
aconitate hydratase (EC:4.2.1.3)
aconitate hydratase n=1 Tax=Afipia birgiae RepID=UPI0002FE9A19
SCN18_30_10_14_R3_B_scaffold_1195_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10979..11584
DNA (606bp) protein (202aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000255|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000255|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000255|HAMAP-Rule:MF_01707}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Cytochrome c biogenesis ATP-binding export protein CcmA n=2 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=CCMA_RHOPB
cytochrome c biogenesis protein CcmA
SCN18_30_10_14_R3_B_scaffold_1195_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11581..12249
DNA (669bp) protein (223aa)
Heme exporter protein B n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1L8_9BRAD
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
heme exporter protein CcmB
SCN18_30_10_14_R3_B_scaffold_1195_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12431..13162
DNA (732bp) protein (244aa)
Heme exporter protein C n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4N1_9BRAD
Heme exporter protein C {ECO:0000313|EMBL:EKS34625.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cycZ; heme exporter protein C
SCN18_30_10_14_R3_B_scaffold_1195_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13167..13358
DNA (192bp) protein (64aa)
Heme exporter protein CcmD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZJ7_9BRAD
Heme exporter protein CcmD {ECO:0000313|EMBL:EKS34626.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hemagglutination activity protein
SCN18_30_10_14_R3_B_scaffold_1195_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..13945
DNA (591bp) protein (197aa)
Thiol:disulfide interchange protein CycY n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXC6_9BRAD
Thiol:disulfide interchange protein CycY {ECO:0000313|EMBL:EKS33811.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
thiol:disulfide interchange protein CycY
SCN18_30_10_14_R3_B_scaffold_1195_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14086..14454
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NU32_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33812.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1195_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14731..15342)
DNA (612bp) protein (204aa)
Probable intracellular septation protein A n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSC9_AFIFE
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ispZ; intracellular septation protein A
SCN18_30_10_14_R3_B_scaffold_1195_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15499..16443)
DNA (945bp) protein (315aa)
Signal recognition particle receptor FtsY n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4N6_9BRAD
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ftsY; signal recognition particle-docking protein FtsY
SCN18_30_10_14_R3_B_scaffold_1195_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16513..17247
DNA (735bp) protein (245aa)
Pseudouridine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZK3_9BRAD
RluA family pseudouridine synthase {ECO:0000313|EMBL:EKS34631.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative RNA pseudouridine synthase
SCN18_30_10_14_R3_B_scaffold_1195_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17236..18504)
DNA (1269bp) protein (423aa)
Putative 2-methylthioadenine synthase n=2 Tax=Oligotropha carboxidovorans RepID=B6JAP2_OLICO
2-methylthioadenine synthase
Putative 2-methylthioadenine synthase {ECO:0000313|EMBL:AEI04985.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1195_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18507..19379)
DNA (873bp) protein (291aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dapF; diaminopimelate epimerase DapF (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P949_9BRAD
SCN18_30_10_14_R3_B_scaffold_1195_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19594..20481
DNA (888bp) protein (296aa)
Transcriptional activator ligand binding domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V143_9BRAD
Transcriptional activator ligand binding domain protein {ECO:0000313|EMBL:EFI53423.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
transcription activator, effector binding
SCN18_30_10_14_R3_B_scaffold_1195_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20496..21191
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0C6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34876.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1195_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21612..22670)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NW09_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30378.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
beta-lactamase domain-containing protein
SCN18_30_10_14_R3_B_scaffold_1195_24
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23088..23486
DNA (399bp) protein (133aa)
Signal recognition particle protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ99_AFIFE
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ffh; signal recognition particle protein Ffh
Displaying 24 items

View Taxonomy