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SCN18_30_10_14_R3_B_scaffold_468

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_468_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..265)
DNA (264bp) protein (88aa)
Histone deacetylase superfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9C2_9BRAD
Histone deacetylase superfamily {ECO:0000313|EMBL:EFI50760.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
histone deacetylase superfamily protein
SCN18_30_10_14_R3_B_scaffold_468_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316..1074)
DNA (759bp) protein (253aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9C3_9BRAD
2,3-dehydroadipyl-CoA hydratase {ECO:0000313|EMBL:CEG08833.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
enoyl-CoA hydratase/isomerase
SCN18_30_10_14_R3_B_scaffold_468_3
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1210..2160
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P119_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32128.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
lactoylglutathione lyase-like lyase
SCN18_30_10_14_R3_B_scaffold_468_4
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2335..4116)
DNA (1782bp) protein (594aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9C4_9BRAD
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EFI50762.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
acyl-CoA dehydrogenase
SCN18_30_10_14_R3_B_scaffold_468_5
unknown

Not on your lists

comp(4343..4882)
DNA (540bp) protein (180aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_468_trna_1
unknown

Not on your lists

4377..4448
DNA (72bp)
transferRNA Gln
SCN18_30_10_14_R3_B_scaffold_468_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5191..6033
DNA (843bp) protein (281aa)
molybdenum transport protein (EC:2.4.2.19)
Molybdenum transport protein {ECO:0000313|EMBL:AGT07253.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AGT07253.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Molybdenum transport protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y7E1_PARAH
SCN18_30_10_14_R3_B_scaffold_468_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5988..6965)
DNA (978bp) protein (326aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGE4_RHOPT
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACF01181.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_30_10_14_R3_B_scaffold_468_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7005..7739
DNA (735bp) protein (245aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J057_RHOP2
molybdenum ABC transporter, periplasmic molybdate-binding protein
Molybdenum ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:ABD06153.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_30_10_14_R3_B_scaffold_468_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7736..8440
DNA (705bp) protein (235aa)
Molybdate ABC transporter, inner membrane subunit n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGZ4_RHOPT
molybdate ABC transporter inner membrane subunit
Molybdate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACF01183.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_30_10_14_R3_B_scaffold_468_10
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8693..9292
DNA (600bp) protein (200aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5M7_9BRAD
Nitrogen fixation regulation protein FixK {ECO:0000313|EMBL:CEG08404.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
SCN18_30_10_14_R3_B_scaffold_468_11
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9400..15378
DNA (5979bp) protein (1993aa)
Filamentous haemagglutinin family outer membrane protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBJ5_BEII9
filamentous hemagglutinin outer membrane protein
Filamentous haemagglutinin family outer membrane protein {ECO:0000313|EMBL:ACB96621.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCN18_30_10_14_R3_B_scaffold_468_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15381..16211
DNA (831bp) protein (277aa)
phnC; ABC transporter, phosphonate transport protein PhnC (EC:3.6.3.28)
ABC transporter, phosphonate transport protein PhnC {ECO:0000313|EMBL:AEI05393.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEI05393.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
ABC transporter, phosphonate transport protein PhnC n=2 Tax=Oligotropha carboxidovorans RepID=B6JJH2_OLICO
SCN18_30_10_14_R3_B_scaffold_468_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16219..17739
DNA (1521bp) protein (507aa)
5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JJH1_OLICO
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AEI05394.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_468_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18125..20284
DNA (2160bp) protein (720aa)
aniA1; copper-containing nitrite reductase AniA (EC:1.7.2.1)
Copper-containing nitrite reductase AniA {ECO:0000313|EMBL:AEI05588.1}; EC=1.7.2.1 {ECO:0000313|EMBL:AEI05588.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Copper-containing nitrite reductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JIX6_OLICO
SCN18_30_10_14_R3_B_scaffold_468_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20669..20920
DNA (252bp) protein (84aa)
Putative glycin-rich signal peptide protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA63_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07700.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_468_16
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21099..22175
DNA (1077bp) protein (359aa)
NADPH-dependent FMN reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003794C0C
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:EHR03933.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
NADPH-dependent fmn reductase
SCN18_30_10_14_R3_B_scaffold_468_17
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22306..22836
DNA (531bp) protein (177aa)
membrane protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000363FAEC
Uncharacterized protein {ECO:0000313|EMBL:CCE10488.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_468_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23273..23488
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NE19_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CEG06978.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_468_19
unknown

Not on your lists

23618..23806
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000361C613
SCN18_30_10_14_R3_B_scaffold_468_20
unknown

Not on your lists

comp(23836..24108)
DNA (273bp) protein (91aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_468_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24169..24726
DNA (558bp) protein (186aa)
Methionine synthase vitamin-B12 independent n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q3_9BRAD
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:CEG09064.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
methyltransferase
SCN18_30_10_14_R3_B_scaffold_468_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24803..25258
DNA (456bp) protein (152aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JE25_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06231.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_468_23
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25375..26001
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHZ2_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07160.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_468_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26606..27055
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVJ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36000.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_468_25
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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27449..28426
DNA (978bp) protein (326aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q213H5_RHOPB
PpiC-type peptidyl-prolyl cis-trans isomerase
SCN18_30_10_14_R3_B_scaffold_468_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28458..28919
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q213H6_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88460.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_30_10_14_R3_B_scaffold_468_27
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29589..35408
DNA (5820bp) protein (1940aa)
Filamentous hemagglutinin-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ89_NITHX
filamentous hemagglutinin-like protein
Filamentous hemagglutinin-like protein {ECO:0000313|EMBL:ABE61608.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_468_28
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35608..37437
DNA (1830bp) protein (610aa)
Hemolysin activation/secretion protein-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ87_NITHX
hemolysin activation/secretion protein-like
Hemolysin activation/secretion protein-like protein {ECO:0000313|EMBL:ABE61610.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_468_29
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37769..38200
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003709ED6
MotA/TolQ/ExbB proton channel
Outer membrane transport energization protein ExbB {ECO:0000313|EMBL:ABE61611.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 63 in total

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