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SCN18_30_10_14_R3_B_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 296 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_40_1
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..189
DNA (189bp) protein (63aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu (Fragment) n=1 Tax=Acidovorax sp. CF316 RepID=J0TZ97_9BURK
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_30_10_14_R3_B_scaffold_40_trna_1
unknown

Not on your lists

205..277
DNA (73bp)
transferRNA Trp
SCN18_30_10_14_R3_B_scaffold_40_2
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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372..758
DNA (387bp) protein (129aa)
Protein translocase subunit SecE n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYR6_9BURK
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_3
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

755..1351
DNA (597bp) protein (199aa)
Transcription termination/antitermination protein NusG n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWC0_9BURK
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_4
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1513..1944
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=2 Tax=Acidovorax RepID=K0I5I7_9BURK
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
SCN18_30_10_14_R3_B_scaffold_40_5
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1945..2640
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HU10_9BURK
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_6
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2881..3405
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HMH5_9BURK
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_7
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3446..3823
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYS1_9BURK
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_8
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4090..8202
DNA (4113bp) protein (1371aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWC4_9BURK
SCN18_30_10_14_R3_B_scaffold_40_9
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8224..12459
DNA (4236bp) protein (1412aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5J1_9BURK
SCN18_30_10_14_R3_B_scaffold_40_10
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12639..13250
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HU11_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44152.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_11
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13410..14738
DNA (1329bp) protein (443aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
16S rRNA methyltransferase B n=1 Tax=Acidovorax sp. KKS102 RepID=K0HMI0_9BURK
16S rRNA methyltransferase B
SCN18_30_10_14_R3_B_scaffold_40_12
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14749..15360
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYS7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44154.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_13
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15426..17651
DNA (2226bp) protein (742aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWC8_9BURK
multi-sensor signal transduction histidine kinase
SCN18_30_10_14_R3_B_scaffold_40_14
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17694..18377
DNA (684bp) protein (228aa)
Two component Fis family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5J4_9BURK
two component Fis family transcriptional regulator
Two component Fis family transcriptional regulator {ECO:0000313|EMBL:AFU44156.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_trna_2
unknown

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18438..18510
DNA (73bp)
transferRNA Phe
SCN18_30_10_14_R3_B_scaffold_40_15
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18688..19941
DNA (1254bp) protein (418aa)
Molecular chaperone, HSP70 class n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYT8_9BURK
molecular chaperone, HSP70 class
Molecular chaperone, HSP70 class {ECO:0000313|EMBL:AFU44164.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_16
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20043..20972)
DNA (930bp) protein (310aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Uroporphyrin-III C/tetrapyrrole methyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWD9_9BURK
uroporphyrin-III C/tetrapyrrole methyltransferase
SCN18_30_10_14_R3_B_scaffold_40_17
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21083..21394
DNA (312bp) protein (104aa)
UPF0102 protein C380_02200 n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5K0_9BURK
hypothetical protein
UPF0102 protein C380_02200 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_18
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21485..22084
DNA (600bp) protein (200aa)
Phosphoheptose isomerase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HU18_9BURK
phosphoheptose isomerase
Phosphoheptose isomerase {ECO:0000313|EMBL:AFU44167.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_19
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22081..22746
DNA (666bp) protein (222aa)
Transport-associated protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HMJ0_9BURK
transport-associated protein
Transport-associated protein {ECO:0000313|EMBL:AFU44168.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_20
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22875..23789)
DNA (915bp) protein (305aa)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYU6_9BURK
3-hydroxyisobutyrate dehydrogenase
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:AFU44169.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_21
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23889..25025)
DNA (1137bp) protein (379aa)
Twitching motility protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWE2_9BURK
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:AFU44170.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_22
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25084..25719)
DNA (636bp) protein (212aa)
Putative Crp/Fnr family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5K3_9BURK
Crp/Fnr family transcriptional regulator
Putative Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:AFU44171.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_23
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25787..26830)
DNA (1044bp) protein (348aa)
Twitching motility protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HU22_9BURK
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:AFU44172.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_24
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26868..27587
DNA (720bp) protein (240aa)
Alanine racemase domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HMJ4_9BURK
alanine racemase domain-containing protein
Alanine racemase domain-containing protein {ECO:0000313|EMBL:AFU44173.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_25
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27594..28664)
DNA (1071bp) protein (357aa)
Threonine aldolase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYV2_9BURK
threonine aldolase
Threonine aldolase {ECO:0000313|EMBL:AFU44174.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_30_10_14_R3_B_scaffold_40_26
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28774..30021)
DNA (1248bp) protein (416aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Acidovorax radicis RepID=UPI0002377BF8
extracellular ligand-binding receptor
Tax=GWA2_Burkholderiales_64_37_curated
SCN18_30_10_14_R3_B_scaffold_40_27
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30075..30725)
DNA (651bp) protein (217aa)
TetR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377BF7
TetR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
SCN18_30_10_14_R3_B_scaffold_40_28
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30870..32480
DNA (1611bp) protein (537aa)
AMP-dependent synthetase n=1 Tax=Acidovorax radicis RepID=UPI0002377BF6
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying items 1-30 of 296 in total

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