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SCN18_30_10_14_R3_P_scaffold_2340

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_P_scaffold_2340_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(83..400)
DNA (318bp) protein (106aa)
Transcriptional regulator, LuxR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12DR4_POLSJ
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABE43328.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCN18_30_10_14_R3_P_scaffold_2340_2
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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682..1758
DNA (1077bp) protein (359aa)
Transcriptional regulator, AraC family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R913_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJC56391.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Transcriptional regulator, AraC family
SCN18_30_10_14_R3_P_scaffold_2340_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1787..2083)
DNA (297bp) protein (99aa)
Major facilitator superfamily MFS_1 n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WUP6_COMTE
MFS transporter {ECO:0000313|EMBL:KGH08783.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
major facilitator superfamily MFS_1
SCN18_30_10_14_R3_P_scaffold_2340_4
unknown

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2091..2246
DNA (156bp) protein (52aa)

This feature has no annotations

SCN18_30_10_14_R3_P_scaffold_2340_5
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2193..2813)
DNA (621bp) protein (207aa)
Putative transposase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8INY0_AZOC5
transposase
Putative transposase {ECO:0000313|EMBL:BAF89803.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_30_10_14_R3_P_scaffold_2340_6
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(3046..3951)
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NQI7_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF41615.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
transcriptional regulator
SCN18_30_10_14_R3_P_scaffold_2340_7
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4086..5018
DNA (933bp) protein (311aa)
Tricarboxylate transporter family protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N2J4_9RHIZ
Tricarboxylate transporter family protein {ECO:0000313|EMBL:EKF41618.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
tricarboxylate transporter family protein
SCN18_30_10_14_R3_P_scaffold_2340_8
unknown

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5046..5456
DNA (411bp) protein (137aa)

This feature has no annotations

SCN18_30_10_14_R3_P_scaffold_2340_9
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5463..6965
DNA (1503bp) protein (501aa)
Tricarboxylate transporter family protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P2Q6_9RHIZ
Tricarboxylate transporter family protein {ECO:0000313|EMBL:EKF41616.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Tricarboxylate transporter family protein
SCN18_30_10_14_R3_P_scaffold_2340_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6962..7729
DNA (768bp) protein (256aa)
UPF0271 protein Mnod_5650 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQH8_METNO
LamB/YcsF family protein
UPF0271 protein Mnod_5650 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_30_10_14_R3_P_scaffold_2340_11
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

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8278..9510
DNA (1233bp) protein (411aa)
UPI0003CF421A related cluster n=1 Tax=unknown RepID=UPI0003CF421A
Uncharacterized protein {ECO:0000313|EMBL:ESY89432.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_2340_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9652..10350
DNA (699bp) protein (233aa)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:KFC70118.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KFC70118.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUT2_POLNA
SCN18_30_10_14_R3_P_scaffold_2340_13
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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comp(10425..10817)
DNA (393bp) protein (131aa)
Blr0876 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89W17_BRADU
Uncharacterized protein {ECO:0000313|EMBL:CEG09622.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
Displaying 13 items

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